Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1003
         (641 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   0.93 
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   2.8  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   6.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.6  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 24  PHGSTFRLGADSGRFSQCCSRPPCEQR 104
           P+G T   G D G +   CS  PCE +
Sbjct: 88  PYGYT---GKDCGEYVDWCSTNPCENQ 111


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +1

Query: 172 KDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYA 327
           KD ++   D++   P+   + +  G   V G+ EEK  ++  +    TRR A
Sbjct: 83  KDNYRKVTDLKKRFPKLKVLLSVGGNADVSGQDEEKNIKYRNLLETTTRRLA 134


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 8   LSVLVASWINISAWG*LRKIFSVL 79
           LSV+ +S+++I+ W  L K F  +
Sbjct: 488 LSVIKSSFLDINTWKMLVKSFDAI 511


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 240 GRLHRG*RQTRGEERSAWLHIASIHSSLRFAGGLY 344
           G  H G  ++     +AW  + S  S L  +GG++
Sbjct: 172 GATHHGGIKSDSVTSNAWWDVHSTGSWLDMSGGMH 206


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,938
Number of Sequences: 336
Number of extensions: 3416
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)