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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1003
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0485 - 8808139-8808618                                           41   7e-04
03_02_0484 + 8805053-8805538                                           41   0.001
03_02_0483 - 8804021-8804485                                           41   0.001
03_02_0478 + 8775892-8776377                                           40   0.002
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015           39   0.003
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457           38   0.009
01_01_0229 - 1943473-1943922                                           37   0.012
01_01_0231 + 1951047-1951499                                           37   0.016
02_02_0077 - 6586638-6587165                                           35   0.048
01_01_0227 + 1933247-1933699                                           35   0.063
05_03_0545 - 15244647-15245147,15245342-15245635                       31   0.59 
09_04_0139 + 15030753-15031208,15031298-15031523,15031599-150319...    29   3.1  
07_01_1127 + 10456895-10457388,10457488-10458112                       29   3.1  
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786     29   4.1  
09_03_0036 + 11772940-11773171,11774995-11775104                       29   4.1  
04_01_0252 - 3329712-3331061                                           29   4.1  
03_01_0491 + 3720842-3720958,3721904-3723109                           28   5.5  
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434...    28   7.2  
04_01_0106 + 1102880-1105691,1105781-1105806                           28   7.2  
02_02_0489 + 10869482-10871218                                         28   7.2  
12_02_0381 + 18376045-18376114,18376270-18376420,18376524-183766...    27   9.6  
01_01_0900 + 7091970-7092068,7092175-7093131,7093210-7093968,709...    27   9.6  

>03_02_0485 - 8808139-8808618
          Length = 159

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
 Frame = +1

Query: 196 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 351
           DV     EE+ V+  DG I+ + G+     EEK D+   + R   +F RR+ LPE    E
Sbjct: 68  DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127

Query: 352 SVESRLSSDGVLSVIAPRKVP 414
            +++ +  +GVL+V  P++ P
Sbjct: 128 QIKASM-ENGVLTVTVPKEEP 147


>03_02_0484 + 8805053-8805538
          Length = 161

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
 Frame = +1

Query: 196 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 351
           DV     EE+ V+  DG ++ + G+     EEK D+   + R   +F RR+ LPE    E
Sbjct: 70  DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129

Query: 352 SVESRLSSDGVLSVIAPRKVP 414
            +++ +  +GVL+V  P++ P
Sbjct: 130 QIKASM-ENGVLTVTVPKEEP 149


>03_02_0483 - 8804021-8804485
          Length = 154

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
 Frame = +1

Query: 196 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 351
           DV     EE+ V+  DG ++ + G+     EEK D+   + R   +F RR+ LPE    E
Sbjct: 63  DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122

Query: 352 SVESRLSSDGVLSVIAPRKVP 414
            +++ +  +GVL+V  P++ P
Sbjct: 123 QIKASM-ENGVLTVTVPKEEP 142


>03_02_0478 + 8775892-8776377
          Length = 161

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
 Frame = +1

Query: 196 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 351
           DV     EE+ V+  DG I+ + G+     EEK DQ   + R   +F RR+ LP+    E
Sbjct: 70  DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129

Query: 352 SVESRLSSDGVLSVIAPRK 408
            +++ +  +GVL+V  P++
Sbjct: 130 QIKASM-ENGVLTVTVPKE 147


>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
          Length = 327

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
 Frame = +1

Query: 115 PWRHLAAAARDLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQ-- 288
           P R LA     +   +  D  + ++  D+   + EE+ V   D  +V+ G+H++++ +  
Sbjct: 122 PRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGA 181

Query: 289 ----HGYISRQ----FTRRYALPEGCTAESVESRLSSDGVLSVIAPRKVPPAVEGERKIP 444
                G+   +    +  R ALP+ C    V + L  +GVL V  P+      E ERK+ 
Sbjct: 182 EGSGDGWWKERSVSSYDMRLALPDECDKSKVRAEL-KNGVLLVTVPK-----TEVERKVI 235

Query: 445 IAQTGPVRKEVKDQSNGD 498
             Q   ++K V +  + +
Sbjct: 236 DVQIKYLKKLVMENCSDE 253


>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
          Length = 438

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
 Frame = +1

Query: 196 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 351
           D+     EE+ V+  +G + V+ G+     E+K D+   + R   QF RR+ LPE    +
Sbjct: 59  DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118

Query: 352 SVESRLSSDGVLSVIAPR 405
            V++ L  +GVL+V  P+
Sbjct: 119 QVKAGL-ENGVLTVTVPK 135


>01_01_0229 - 1943473-1943922
          Length = 149

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
 Frame = +1

Query: 196 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 351
           D+     EE+ V+  +G + V+ G+     E+K D+   + R   QF RR+ LPE    +
Sbjct: 58  DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117

Query: 352 SVESRLSSDGVLSVIAPR 405
            V++ +  +GVL+V  P+
Sbjct: 118 QVKASM-ENGVLTVTVPK 134


>01_01_0231 + 1951047-1951499
          Length = 150

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
 Frame = +1

Query: 196 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 351
           D+     EE+ V+  +G + V+ G+     E+K D+   + R   QF RR+ LPE    +
Sbjct: 59  DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118

Query: 352 SVESRLSSDGVLSVIAPR 405
            V++ +  +GVL+V  P+
Sbjct: 119 QVKAGM-ENGVLTVTVPK 135


>02_02_0077 - 6586638-6587165
          Length = 175

 Score = 35.1 bits (77), Expect = 0.048
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
 Frame = +1

Query: 97  SREYYRPWRHLAAAARDLGSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIV-VEGKHE 273
           +R Y R  R +A    D+     S      + +D+   AP ++ V+  DG ++ + G+  
Sbjct: 36  TRAYVRDRRAMANTPMDVKELRASGA--LVLAVDMPGVAPADVRVEVEDGNVLAISGERR 93

Query: 274 EKK---DQHG----YISRQ-----FTRRYALPEGCTAESVESRLSSDGVLSVIAPRKVPP 417
                 D  G    Y+  +     F RR+ LPE    + V +    DGVL+V   +K PP
Sbjct: 94  RPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEYK-DGVLTVTVDKKPPP 152

Query: 418 AVEGERKIPIAQTG 459
             +  R + +   G
Sbjct: 153 EPKKPRVVEVKVAG 166


>01_01_0227 + 1933247-1933699
          Length = 150

 Score = 34.7 bits (76), Expect = 0.063
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = +1

Query: 256 VEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLSSDGVLSVIAPRK 408
           V+GK++E+       S +F RR+ LP G   + V + +  +GVL+V  P++
Sbjct: 87  VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKE 136


>05_03_0545 - 15244647-15245147,15245342-15245635
          Length = 264

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -2

Query: 271 RVCLQPRCSRPPF*QRFLPGRNAGR 197
           R CLQPR SRPP  ++F  GR+  R
Sbjct: 221 RDCLQPRQSRPPHYRQFTRGRHPNR 245


>09_04_0139 +
           15030753-15031208,15031298-15031523,15031599-15031981,
           15032353-15032685,15032902-15033010,15033089-15033465
          Length = 627

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 2/130 (1%)
 Frame = +1

Query: 22  RLMDQHFGLGLTPEDFLSAAAGPLVSREYYRPWRHLAAAARDLG--SSIKSDKDKFQVNL 195
           + ++ HF + LT +   +          + R W+   +   DL   S+  SD D F ++L
Sbjct: 407 KALNDHFNINLTSDQITN----------HIRTWKRKYSKIADLRKLSAALSDDDNFIISL 456

Query: 196 DVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLSS 375
           D +H+A + I    AD   + +  H   K    + +   T +YA      + S    L+ 
Sbjct: 457 DHKHYA-DHIKDHKADAEYLNKPIHNYSKMLVIFGNSLATGKYAKGSATGSASRVHALNE 515

Query: 376 DGVLSVIAPR 405
           +   S  AP+
Sbjct: 516 ENGASSSAPK 525


>07_01_1127 + 10456895-10457388,10457488-10458112
          Length = 372

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 271 RVCLQPRCSRPPF*QRFLPGRNAGR 197
           R CLQPR SRPP  ++F   R+  R
Sbjct: 329 RDCLQPRQSRPPHYRQFTRSRHPNR 353


>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
          Length = 489

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 218 KKSLLKRRTATSWLKANTRRRKISMVTYRVNS 313
           KKS     T TS  K  TRRRK+++V Y   S
Sbjct: 16  KKSAAGELTTTSEKKKKTRRRKVAVVYYLCRS 47


>09_03_0036 + 11772940-11773171,11774995-11775104
          Length = 113

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 216 GRNLC*NGGRLHRG*RQTRGEERSAWLH 299
           G+NL    G+ H G R+ RG+ER   LH
Sbjct: 21  GQNLMDRRGKRHEGRRERRGKERGRNLH 48


>04_01_0252 - 3329712-3331061
          Length = 449

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 271 RVCLQPRCSRPPF*QRFLPGRNAGR 197
           R CLQPR +RPP  ++F   R++ R
Sbjct: 406 RDCLQPRQNRPPHYRQFTRSRHSNR 430


>03_01_0491 + 3720842-3720958,3721904-3723109
          Length = 440

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 99  AHKGAGCSTEKIFRSQPQAEMLIHEATRTLNFV 1
           A  G GC   K+F S+ +A+   H A  +L F+
Sbjct: 391 ADHGRGCKLAKVFESKDEAKASTHTAISSLPFM 423


>11_06_0151 -
           20643032-20643085,20643202-20643307,20643415-20643495,
           20643588-20643715,20643829-20643903,20644853-20645374,
           20646622-20646687,20647990-20648076,20648173-20648247,
           20648705-20648821,20648932-20649015,20649152-20649217,
           20649352-20649417,20650079-20650150,20650231-20650332,
           20650428-20650605,20650700-20650755,20653159-20653269,
           20653354-20653422,20653558-20653741,20653826-20653914,
           20654070-20654147,20654509-20654631,20654755-20654874,
           20654975-20655055,20655285-20655431,20655533-20655611,
           20657114-20657223,20659138-20659236,20659467-20659582,
           20659673-20659781,20659839-20660069,20660152-20660417,
           20661349-20661506,20661601-20661751,20661897-20661966,
           20662203-20662232
          Length = 1451

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +1

Query: 163 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 336
           +SDKDK   N+D +  A E + V+        E K +EK + H Y   +  R   L E
Sbjct: 502 ESDKDKIMCNVDEKDIA-EHLRVRLKKEQEEKEHKKKEKAEAHLYTIIKVARDENLKE 558


>04_01_0106 + 1102880-1105691,1105781-1105806
          Length = 945

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 118 WRHLAAAARDLGSSIKSDKD-KFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEK 279
           W+ LAA  ++  + +++ ++ K Q N+D+   +P  I  + +  + +   KH  K
Sbjct: 119 WQRLAAELKEAQNRLQNLRNLKVQYNIDLSEESPSSIRYEDSQVHTIQHIKHNNK 173


>02_02_0489 + 10869482-10871218
          Length = 578

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = +1

Query: 115 PWRHLAAAARDLGSSIKSDK---DKFQVNLDVQHFAPEEISVKTADGYIVVEGK-HEEKK 282
           P      AA D G+ + S K   D  +++ D     P+E +  T +G I+  G+ H+EK 
Sbjct: 430 PKEATTTAASDDGTLVGSKKGKADNGKLDGDTHSVMPKEATAGTQNGGILTGGENHKEKV 489

Query: 283 DQHGYISRQFTRRYA 327
           D+   +     R YA
Sbjct: 490 DKDANVP-SIRREYA 503


>12_02_0381 +
           18376045-18376114,18376270-18376420,18376524-18376681,
           18378680-18378945,18379025-18379243,18379309-18379417,
           18379488-18379603,18379935-18380033,18381447-18381556,
           18382928-18383006,18383127-18383273,18383363-18383443,
           18383529-18383648,18383902-18384024,18384276-18384353,
           18384459-18384547,18384653-18384761,18385018-18385086,
           18385200-18385310,18385657-18385712,18385808-18385985,
           18386065-18386166,18386243-18386314,18386489-18386554,
           18386674-18386739,18386853-18386936,18387080-18387196,
           18388077-18388163,18389321-18389341
          Length = 1050

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +1

Query: 163 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 336
           +SDKDK   N+D +  A E + ++        E K +EK + H Y   +  R   L E
Sbjct: 488 ESDKDKIMCNVDEKDIA-EHLRIRLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDLKE 544


>01_01_0900 +
           7091970-7092068,7092175-7093131,7093210-7093968,
           7094322-7094366
          Length = 619

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +2

Query: 338 AVRLNLWSPGCLQMVCCL*SHPGRCRQQWRVNARFRSPKPDP 463
           AVR NL +   L    C     GR  + WRV AR R+   DP
Sbjct: 220 AVRPNLTTYNILVKAWC---DAGRLEEAWRVVARMRASGADP 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,361,745
Number of Sequences: 37544
Number of extensions: 478133
Number of successful extensions: 1505
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1505
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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