Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1001
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    25   0.79 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.2  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   5.5  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    22   5.5  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   7.3  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    21   7.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.7  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +3

Query: 453 YSPLNAEASYQ*K----HALFPWENLSLPILRIVLGTPNY 560
           YSP ++++ YQ +    HA   W  L  P  ++V+G P Y
Sbjct: 296 YSP-SSDSQYQKQLNVEHAANLWVKLGTPKEKLVIGMPTY 334


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 447  LQYSPLNAEASYQ*KHALFPWENLSLPILRIVLGTPNY 560
            L Y P +    Y    ++  W +  +P  +IV+G P Y
Sbjct: 1606 LYYHPEDEVVFYNANFSINYWISEGVPRRKIVMGMPLY 1643


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 444 WLQYSPLNAEASYQ*KHALFPWENLSLPIL 533
           WLQ    N       KH LF  +N+  PI+
Sbjct: 102 WLQNVEPNLRPKLLLKHNLFLLDNIVKPII 131


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 118 RRTDSFCFF*VYFIQKFTSFIYRLR 44
           R T S+ F  V+ +   T+F++RL+
Sbjct: 97  RSTFSWTFIDVFIMLTSTAFVFRLK 121


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 457 LYCSQWRPLRISFLYFKLFYIYVLN*HTVKVINA-IC 350
           LYC        SF+ +K   I +L  + V V+ A IC
Sbjct: 334 LYCVYTTATYDSFMIYKTTNIIILGLNVVYVVTAWIC 370


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 457 LYCSQWRPLRISFLYFKLFYIYVLN*HTVKVINA-IC 350
           LYC        SF+ +K   I +L  + V V+ A IC
Sbjct: 59  LYCVYTTATYDSFMIYKTTNIIILGLNVVYVVTAWIC 95


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 578 LALNAMIIWSP*NNP*DWQ*QIFPWKE 498
           L  +A+  WSP  NP  +      WK+
Sbjct: 423 LLTSALASWSPLTNPKQYMEIFARWKD 449


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,708
Number of Sequences: 336
Number of extensions: 3409
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)