BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1001 (698 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 27 3.4 >SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 772 Score = 26.6 bits (56), Expect = 3.4 Identities = 18/63 (28%), Positives = 33/63 (52%) Frame = +2 Query: 320 LRQRKKKYSIANSIYYFYSMLV*YINIKQFKV*KAYSKWSPLAAIQSFKR*GQLSIEART 499 L+Q+ + +++IY F S LV Y + +A +WS L +S +R L+I + Sbjct: 708 LKQQILACNSSSAIYSFLSDLVQYSFQPDSFIKEAADRWSKLVTEKSIERKRNLAISSLN 767 Query: 500 LSM 508 L++ Sbjct: 768 LAV 770 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,745,238 Number of Sequences: 5004 Number of extensions: 54541 Number of successful extensions: 91 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 91 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 323158234 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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