Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1001
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0253 - 27901204-27901251,27901673-27901744,27901944-279020...    28   6.2  

>01_06_0253 -
           27901204-27901251,27901673-27901744,27901944-27902030,
           27902484-27902574,27903706-27903769,27904354-27904461,
           27905124-27905181,27905813-27905956,27906307-27906372,
           27907227-27907299,27908439-27908500,27908923-27909000,
           27909124-27909229,27909317-27909483,27909961-27910048,
           27911204-27911313,27911833-27911928,27912354-27912461,
           27912568-27912711,27913850-27914065
          Length = 661

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
 Frame = -2

Query: 439 RPLRISFLYFKLFYIYVLN*HTVKVINAICNRIFFFPLSQY------LIFMARLGI*MNC 278
           R +R  F+Y +L +++ LN   + ++N +   ++    SQ+      L F+ +L      
Sbjct: 91  RAMRFYFVYLRLDWLWSLNLFALILLNFLEKPLWCRGYSQHACDQRDLYFLGQLPYLSKT 150

Query: 277 CS*V*NSITT*PIWLILVLNYLWK-SREGLKGS*YENARN*LKITILFVL*C 125
            S +   +T     +ILV++  +  S EGL    ++N  N LK+ +LF+L C
Sbjct: 151 ESLIYEGLTL----VILVMDIFYPLSYEGLNLF-WKNTINKLKVLLLFILAC 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,261,953
Number of Sequences: 37544
Number of extensions: 293966
Number of successful extensions: 464
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)