Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1001
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)             44   9e-05
SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   9e-05
SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6)                   44   9e-05
SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9)                 42   4e-04
SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9)                  42   6e-04
SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)           37   0.018
SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.51 

>SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 22/74 (29%), Positives = 35/74 (47%)
 Frame = -3

Query: 648 DWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNWPQ 469
           +W   SPDLNP D+ +   L+          +E LK ++   +   P E     I N+ +
Sbjct: 84  EWAPHSPDLNPPDFYLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFAR 143

Query: 468 RLKDCIAANGDHFE 427
           R++ C+  NG H E
Sbjct: 144 RVQVCLQRNGGHLE 157


>SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)
          Length = 615

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = -3

Query: 648 DWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNWPQ 469
           +W   SPDLNP D+ +   L+          +E LK ++   +   P E     I N+ +
Sbjct: 308 EWAPHSPDLNPPDFYLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFAR 367

Query: 468 RLKDCIAANG 439
           R++ C+  NG
Sbjct: 368 RVQVCLERNG 377


>SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 474

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = -3

Query: 648 DWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNWPQ 469
           +W   SPDLNP D+ +   L+          +E LK ++   +   P E     I N+ +
Sbjct: 84  EWAPHSPDLNPPDFYLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFAR 143

Query: 468 RLKDCIAANG 439
           R++ C+  NG
Sbjct: 144 RVQVCLQRNG 153


>SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6)
          Length = 267

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = -3

Query: 648 DWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNWPQ 469
           +W   SPDLNP D+ +   L+          +E LK ++   +   P E     I N+ +
Sbjct: 32  EWAPHSPDLNPPDFYLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFAR 91

Query: 468 RLKDCIAANG 439
           R++ C+  NG
Sbjct: 92  RVQVCLQRNG 101


>SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
          Length = 254

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -3

Query: 648 DWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNWPQ 469
           +W   SPDLNP D+ +   L+          +E LK ++   +   P E     I N+ +
Sbjct: 84  EWAQHSPDLNPPDFYLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFAR 143

Query: 468 RLKDCIAAN 442
           R++ C+  N
Sbjct: 144 RVQVCLERN 152


>SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
          Length = 153

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -3

Query: 648 DWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNWPQ 469
           +W   SPDLNP D+ +   L+          +E LK ++   +   P E     I N+ +
Sbjct: 84  EWVPHSPDLNPPDFYLWGFLKDNVYQGNPQTIEKLKTAITAKINAIPKEECIKVIQNFAR 143

Query: 468 RLKDCIAAN 442
           R++ C+  N
Sbjct: 144 RVQVCLERN 152


>SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)
          Length = 999

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -3

Query: 648 DWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNWPQ 469
           +W   SPDLNP D+ +   L+          +E LK ++   +   P E     I N+ +
Sbjct: 693 EWAPHSPDLNPPDFYLWGFLKDNVYQGNPQTIEELKTAITAKIRAIPKEECIKVIQNFAR 752

Query: 468 RLK 460
           R++
Sbjct: 753 RVQ 755


>SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -3

Query: 621 NPLDYDI*SVL-ESTACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNWPQRLKDCIAA 445
           NP++ ++ S++ E T    +   + SLK   + A  N  +  +     + PQRLK+ I A
Sbjct: 199 NPIE-NLWSIIDEETYRDPQPRTMTSLKSRFKKAWRNVSLSTLSELSHSMPQRLKNVIKA 257

Query: 444 NGDHFE*AFYTLNC 403
            G H   A YTL C
Sbjct: 258 KGGH---ANYTLIC 268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,406,615
Number of Sequences: 59808
Number of extensions: 365121
Number of successful extensions: 538
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)