Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1001
         (698 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U33463-1|AAC47095.1|  345|Drosophila melanogaster transposase pr...    31   1.1  
AY118838-1|AAM50698.1|  202|Drosophila melanogaster GM12182p pro...    29   6.1  
AE014297-4421|AAF56924.1|  202|Drosophila melanogaster CG7593-PA...    29   6.1  

>U33463-1|AAC47095.1|  345|Drosophila melanogaster transposase
           protein.
          Length = 345

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
 Frame = -3

Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514
           ++WL  N   +I   D P  SPDLNP++ ++ + L+     +     + L  ++      
Sbjct: 259 RNWLLYNCGKVI---DTPPQSPDLNPIE-NLWAYLKKKVAKRGPKTRQQLMAAIIEEWEK 314

Query: 513 FPME-RVRASIDNWPQRLKDCIAANGDH 433
            P+E  ++  I +  +RL+    ANG H
Sbjct: 315 IPLEYDLKKLIHSMKKRLQLVAKANGGH 342


>AY118838-1|AAM50698.1|  202|Drosophila melanogaster GM12182p
           protein.
          Length = 202

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 476 QLSIEARTLSMGKFVTANLTDCFRDSKLSWRLEQAVLS 589
           Q++ E R   +GKF+ + L DC R     W LE+ +L+
Sbjct: 128 QVAAEYRRKGLGKFIMSTLEDCAR----LWHLEKVMLT 161


>AE014297-4421|AAF56924.1|  202|Drosophila melanogaster CG7593-PA
           protein.
          Length = 202

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 476 QLSIEARTLSMGKFVTANLTDCFRDSKLSWRLEQAVLS 589
           Q++ E R   +GKF+ + L DC R     W LE+ +L+
Sbjct: 128 QVAAEYRRKGLGKFIMSTLEDCAR----LWHLEKVMLT 161


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,734,163
Number of Sequences: 53049
Number of extensions: 521009
Number of successful extensions: 727
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)