BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1001 (698 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical ... 89 3e-18 X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein ( Caeno... 46 3e-05 U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical pr... 46 3e-05 AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical ... 46 3e-05 AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical ... 46 3e-05 AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical ... 46 3e-05 AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical ... 46 3e-05 U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical pr... 46 3e-05 U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical pr... 39 0.003 U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical pr... 39 0.003 AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical ... 39 0.003 AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 38 0.005 U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical pr... 29 2.4 U53139-13|AAK18939.1| 334|Caenorhabditis elegans Hypothetical p... 28 5.6 AB275892-1|BAF34315.1| 334|Caenorhabditis elegans D-aspartate o... 28 5.6 AL117195-6|CAB55013.2| 503|Caenorhabditis elegans Hypothetical ... 28 7.4 AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical ... 28 7.4 U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical pr... 27 9.8 >AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical protein H28G03.4 protein. Length = 459 Score = 89.0 bits (211), Expect = 3e-18 Identities = 38/78 (48%), Positives = 55/78 (70%) Frame = -3 Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514 Q+W E+N D I WP SSPDLNP+DY + SVLE+ ACSK H N++SLK S++ A Sbjct: 321 QAWCESNFPDFIAFNQWPPSSPDLNPMDYSVWSVLEAKACSKPHRNIDSLKDSLKKAWDE 380 Query: 513 FPMERVRASIDNWPQRLK 460 + +RA++D++P+RL+ Sbjct: 381 LDINYLRATVDSFPRRLE 398 Score = 31.9 bits (69), Expect = 0.45 Identities = 12/24 (50%), Positives = 20/24 (83%) Frame = -3 Query: 498 VRASIDNWPQRLKDCIAANGDHFE 427 +RA++D +P+R++ CI A+GD FE Sbjct: 425 LRATVDAFPKRVRVCIEADGDIFE 448 >X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein ( Caenorhabditis eleganstransposable element Tc1. ). Length = 273 Score = 46.0 bits (104), Expect = 3e-05 Identities = 28/85 (32%), Positives = 42/85 (49%) Frame = -3 Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514 +SW + L+ DWPS SPDLNP+++ + LE R N ++ + A Sbjct: 188 RSWFQRRHVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 243 Query: 513 FPMERVRASIDNWPQRLKDCIAANG 439 PM + ID+ P+R + I ANG Sbjct: 244 IPMSVIHKLIDSMPRRCQAVIDANG 268 >U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical protein F18C5.7 protein. Length = 343 Score = 46.0 bits (104), Expect = 3e-05 Identities = 28/85 (32%), Positives = 42/85 (49%) Frame = -3 Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514 +SW + L+ DWPS SPDLNP+++ + LE R N ++ + A Sbjct: 258 RSWFQRRRVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 313 Query: 513 FPMERVRASIDNWPQRLKDCIAANG 439 PM + ID+ P+R + I ANG Sbjct: 314 IPMSVIHKLIDSMPRRCQAVIDANG 338 >AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical protein Y39F10A.4 protein. Length = 343 Score = 46.0 bits (104), Expect = 3e-05 Identities = 28/85 (32%), Positives = 42/85 (49%) Frame = -3 Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514 +SW + L+ DWPS SPDLNP+++ + LE R N ++ + A Sbjct: 258 RSWFQRRHVHLL---DWPSQSPDLNPIEH-LWEKLERRLGGIRASNADAKFNQLENAWKA 313 Query: 513 FPMERVRASIDNWPQRLKDCIAANG 439 PM + ID+ P+R + I ANG Sbjct: 314 IPMSVIHKLIDSMPRRCQAVIDANG 338 >AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical protein T10B5.9 protein. Length = 273 Score = 46.0 bits (104), Expect = 3e-05 Identities = 28/85 (32%), Positives = 42/85 (49%) Frame = -3 Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514 +SW + L+ DWPS SPDLNP+++ + LE R N ++ + A Sbjct: 188 RSWFQRRRVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 243 Query: 513 FPMERVRASIDNWPQRLKDCIAANG 439 PM + ID+ P+R + I ANG Sbjct: 244 IPMSVIHKLIDSMPRRCQAVIDANG 268 >AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical protein T10B5.1 protein. Length = 273 Score = 46.0 bits (104), Expect = 3e-05 Identities = 28/85 (32%), Positives = 42/85 (49%) Frame = -3 Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514 +SW + L+ DWPS SPDLNP+++ + LE R N ++ + A Sbjct: 188 RSWFQRRRVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 243 Query: 513 FPMERVRASIDNWPQRLKDCIAANG 439 PM + ID+ P+R + I ANG Sbjct: 244 IPMSVIHKLIDSMPRRCQAVIDANG 268 >AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical protein T07D3.8 protein. Length = 343 Score = 46.0 bits (104), Expect = 3e-05 Identities = 28/85 (32%), Positives = 42/85 (49%) Frame = -3 Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514 +SW + L+ DWPS SPDLNP+++ + LE R N ++ + A Sbjct: 258 RSWFQRRHVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 313 Query: 513 FPMERVRASIDNWPQRLKDCIAANG 439 PM + ID+ P+R + I ANG Sbjct: 314 IPMSVIHKLIDSMPRRCQAVIDANG 338 >U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical protein R173.2 protein. Length = 314 Score = 45.6 bits (103), Expect = 3e-05 Identities = 28/85 (32%), Positives = 42/85 (49%) Frame = -3 Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514 +SW + L+ DWPS SPDLNP+++ + LE R N ++ + A Sbjct: 229 RSWFQRRRVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 284 Query: 513 FPMERVRASIDNWPQRLKDCIAANG 439 PM + ID+ P+R + I ANG Sbjct: 285 IPMSVIHKLIDSMPRRCQAFIDANG 309 >U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical protein K10B3.2 protein. Length = 141 Score = 39.1 bits (87), Expect = 0.003 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Frame = -3 Query: 648 DWPSSSPDLNPLDYDI*SVLEST--ACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNW 475 DWP+ SPDLNP++ ++ +L A +K + + SLKQ + A + P ++++ + + Sbjct: 66 DWPARSPDLNPIE-NLWGILVRIVYAQNKTYPTVASLKQGILDAWKSIPDNQLKSLVRSM 124 Query: 474 PQRLKDCIAANGD 436 RL + I G+ Sbjct: 125 EDRLFEIIRTQGN 137 >U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical protein R10H1.3 protein. Length = 329 Score = 39.1 bits (87), Expect = 0.003 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Frame = -3 Query: 648 DWPSSSPDLNPLDYDI*SVLEST--ACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNW 475 DWP+ SPDLNP++ ++ +L A +K + + SLKQ + A + P ++++ + + Sbjct: 254 DWPARSPDLNPIE-NLWGILVRIVYAQNKTYPTVASLKQGILDAWKSIPDNQLKSLVRSM 312 Query: 474 PQRLKDCIAANGD 436 RL + I G+ Sbjct: 313 EDRLFEIIRTQGN 325 >AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical protein W07E6.6 protein. Length = 329 Score = 39.1 bits (87), Expect = 0.003 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Frame = -3 Query: 648 DWPSSSPDLNPLDYDI*SVLEST--ACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNW 475 DWP+ SPDLNP++ ++ +L A +K + + SLKQ + A + P ++++ + + Sbjct: 254 DWPARSPDLNPIE-NLWGILVRIVYAQNKTYPTVASLKQGILDAWKSIPDNQLKSLVRSM 312 Query: 474 PQRLKDCIAANGD 436 RL + I G+ Sbjct: 313 EDRLFEIIRTQGN 325 >AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone receptor familyprotein 88, isoform b protein. Length = 459 Score = 38.3 bits (85), Expect = 0.005 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Frame = -3 Query: 648 DWPSSSPDLNPLDYDI*SVLEST--ACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNW 475 DWP+ SPDLNP++ ++ +L A +K + + SLKQ + A + P ++++ + + Sbjct: 384 DWPARSPDLNPIE-NLWGILVRIVYAQNKTYPTVASLKQGILDAWKSIPDNQLKSLVRSM 442 Query: 474 PQRLKDCIAANGD 436 RL + I G+ Sbjct: 443 EDRLFENIRTQGN 455 >U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical protein R05G6.2 protein. Length = 339 Score = 29.5 bits (63), Expect = 2.4 Identities = 18/70 (25%), Positives = 30/70 (42%) Frame = -3 Query: 642 PSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNWPQRL 463 P SPDL P DY + L K+ D+ E LK + ++ + I P + Sbjct: 267 PPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFFSSRSPDFFSRGIMMLPSKW 326 Query: 462 KDCIAANGDH 433 + + NG++ Sbjct: 327 QQVVDTNGEY 336 >U53139-13|AAK18939.1| 334|Caenorhabditis elegans Hypothetical protein F18E3.7a protein. Length = 334 Score = 28.3 bits (60), Expect = 5.6 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = -3 Query: 561 DNLESLKQSVRL---AVTNFPMERVRASIDNWPQRLKDCI 451 DNLESLKQ R V NF R +D +P+ K CI Sbjct: 95 DNLESLKQQQRAYGDIVYNFRFLDDRERLDIFPEPSKHCI 134 >AB275892-1|BAF34315.1| 334|Caenorhabditis elegans D-aspartate oxidase protein. Length = 334 Score = 28.3 bits (60), Expect = 5.6 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = -3 Query: 561 DNLESLKQSVRL---AVTNFPMERVRASIDNWPQRLKDCI 451 DNLESLKQ R V NF R +D +P+ K CI Sbjct: 95 DNLESLKQQQRAYGDIVYNFRFLDDRERLDIFPEPSKHCI 134 >AL117195-6|CAB55013.2| 503|Caenorhabditis elegans Hypothetical protein Y57A10A.8 protein. Length = 503 Score = 27.9 bits (59), Expect = 7.4 Identities = 15/56 (26%), Positives = 25/56 (44%) Frame = -3 Query: 681 ETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514 E++ D+ E P P L P+DYD +D E ++VRL++ + Sbjct: 307 ESDTDDVEFVESLPGK-PKLEPIDYDYDQYFNRDVSYNNYDQEEVENRNVRLSIAS 361 >AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical protein Y49F6A.4 protein. Length = 514 Score = 27.9 bits (59), Expect = 7.4 Identities = 18/68 (26%), Positives = 28/68 (41%) Frame = -3 Query: 642 PSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNWPQRL 463 P SPDL P DY + L K+ D+ E LK + ++ + I P + Sbjct: 242 PPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFFSSRSPDFFSRGIMMLPSKW 301 Query: 462 KDCIAANG 439 + + NG Sbjct: 302 QQVVDTNG 309 >U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical protein D1044.7 protein. Length = 400 Score = 27.5 bits (58), Expect = 9.8 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = -1 Query: 161 LTKNNNFVCPLMCPPSD 111 LT NNNF PL C P D Sbjct: 26 LTSNNNFNQPLTCTPQD 42 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,818,307 Number of Sequences: 27780 Number of extensions: 290931 Number of successful extensions: 568 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 545 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 561 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1613473434 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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