Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1001
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical ... 89 3e-18
X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein ( Caeno... 46 3e-05
U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical pr... 46 3e-05
AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical ... 46 3e-05
AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical ... 46 3e-05
AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical ... 46 3e-05
AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical ... 46 3e-05
U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical pr... 46 3e-05
U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical pr... 39 0.003
U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical pr... 39 0.003
AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical ... 39 0.003
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 38 0.005
U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical pr... 29 2.4
U53139-13|AAK18939.1| 334|Caenorhabditis elegans Hypothetical p... 28 5.6
AB275892-1|BAF34315.1| 334|Caenorhabditis elegans D-aspartate o... 28 5.6
AL117195-6|CAB55013.2| 503|Caenorhabditis elegans Hypothetical ... 28 7.4
AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical ... 28 7.4
U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical pr... 27 9.8
>AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical
protein H28G03.4 protein.
Length = 459
Score = 89.0 bits (211), Expect = 3e-18
Identities = 38/78 (48%), Positives = 55/78 (70%)
Frame = -3
Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514
Q+W E+N D I WP SSPDLNP+DY + SVLE+ ACSK H N++SLK S++ A
Sbjct: 321 QAWCESNFPDFIAFNQWPPSSPDLNPMDYSVWSVLEAKACSKPHRNIDSLKDSLKKAWDE 380
Query: 513 FPMERVRASIDNWPQRLK 460
+ +RA++D++P+RL+
Sbjct: 381 LDINYLRATVDSFPRRLE 398
Score = 31.9 bits (69), Expect = 0.45
Identities = 12/24 (50%), Positives = 20/24 (83%)
Frame = -3
Query: 498 VRASIDNWPQRLKDCIAANGDHFE 427
+RA++D +P+R++ CI A+GD FE
Sbjct: 425 LRATVDAFPKRVRVCIEADGDIFE 448
>X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein (
Caenorhabditis eleganstransposable element Tc1. ).
Length = 273
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/85 (32%), Positives = 42/85 (49%)
Frame = -3
Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514
+SW + L+ DWPS SPDLNP+++ + LE R N ++ + A
Sbjct: 188 RSWFQRRHVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 243
Query: 513 FPMERVRASIDNWPQRLKDCIAANG 439
PM + ID+ P+R + I ANG
Sbjct: 244 IPMSVIHKLIDSMPRRCQAVIDANG 268
>U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical
protein F18C5.7 protein.
Length = 343
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/85 (32%), Positives = 42/85 (49%)
Frame = -3
Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514
+SW + L+ DWPS SPDLNP+++ + LE R N ++ + A
Sbjct: 258 RSWFQRRRVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 313
Query: 513 FPMERVRASIDNWPQRLKDCIAANG 439
PM + ID+ P+R + I ANG
Sbjct: 314 IPMSVIHKLIDSMPRRCQAVIDANG 338
>AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical
protein Y39F10A.4 protein.
Length = 343
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/85 (32%), Positives = 42/85 (49%)
Frame = -3
Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514
+SW + L+ DWPS SPDLNP+++ + LE R N ++ + A
Sbjct: 258 RSWFQRRHVHLL---DWPSQSPDLNPIEH-LWEKLERRLGGIRASNADAKFNQLENAWKA 313
Query: 513 FPMERVRASIDNWPQRLKDCIAANG 439
PM + ID+ P+R + I ANG
Sbjct: 314 IPMSVIHKLIDSMPRRCQAVIDANG 338
>AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical
protein T10B5.9 protein.
Length = 273
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/85 (32%), Positives = 42/85 (49%)
Frame = -3
Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514
+SW + L+ DWPS SPDLNP+++ + LE R N ++ + A
Sbjct: 188 RSWFQRRRVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 243
Query: 513 FPMERVRASIDNWPQRLKDCIAANG 439
PM + ID+ P+R + I ANG
Sbjct: 244 IPMSVIHKLIDSMPRRCQAVIDANG 268
>AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical
protein T10B5.1 protein.
Length = 273
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/85 (32%), Positives = 42/85 (49%)
Frame = -3
Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514
+SW + L+ DWPS SPDLNP+++ + LE R N ++ + A
Sbjct: 188 RSWFQRRRVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 243
Query: 513 FPMERVRASIDNWPQRLKDCIAANG 439
PM + ID+ P+R + I ANG
Sbjct: 244 IPMSVIHKLIDSMPRRCQAVIDANG 268
>AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical
protein T07D3.8 protein.
Length = 343
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/85 (32%), Positives = 42/85 (49%)
Frame = -3
Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514
+SW + L+ DWPS SPDLNP+++ + LE R N ++ + A
Sbjct: 258 RSWFQRRHVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 313
Query: 513 FPMERVRASIDNWPQRLKDCIAANG 439
PM + ID+ P+R + I ANG
Sbjct: 314 IPMSVIHKLIDSMPRRCQAVIDANG 338
>U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical
protein R173.2 protein.
Length = 314
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/85 (32%), Positives = 42/85 (49%)
Frame = -3
Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514
+SW + L+ DWPS SPDLNP+++ + LE R N ++ + A
Sbjct: 229 RSWFQRRRVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 284
Query: 513 FPMERVRASIDNWPQRLKDCIAANG 439
PM + ID+ P+R + I ANG
Sbjct: 285 IPMSVIHKLIDSMPRRCQAFIDANG 309
>U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical
protein K10B3.2 protein.
Length = 141
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = -3
Query: 648 DWPSSSPDLNPLDYDI*SVLEST--ACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNW 475
DWP+ SPDLNP++ ++ +L A +K + + SLKQ + A + P ++++ + +
Sbjct: 66 DWPARSPDLNPIE-NLWGILVRIVYAQNKTYPTVASLKQGILDAWKSIPDNQLKSLVRSM 124
Query: 474 PQRLKDCIAANGD 436
RL + I G+
Sbjct: 125 EDRLFEIIRTQGN 137
>U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical
protein R10H1.3 protein.
Length = 329
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = -3
Query: 648 DWPSSSPDLNPLDYDI*SVLEST--ACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNW 475
DWP+ SPDLNP++ ++ +L A +K + + SLKQ + A + P ++++ + +
Sbjct: 254 DWPARSPDLNPIE-NLWGILVRIVYAQNKTYPTVASLKQGILDAWKSIPDNQLKSLVRSM 312
Query: 474 PQRLKDCIAANGD 436
RL + I G+
Sbjct: 313 EDRLFEIIRTQGN 325
>AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical
protein W07E6.6 protein.
Length = 329
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = -3
Query: 648 DWPSSSPDLNPLDYDI*SVLEST--ACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNW 475
DWP+ SPDLNP++ ++ +L A +K + + SLKQ + A + P ++++ + +
Sbjct: 254 DWPARSPDLNPIE-NLWGILVRIVYAQNKTYPTVASLKQGILDAWKSIPDNQLKSLVRSM 312
Query: 474 PQRLKDCIAANGD 436
RL + I G+
Sbjct: 313 EDRLFEIIRTQGN 325
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = -3
Query: 648 DWPSSSPDLNPLDYDI*SVLEST--ACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNW 475
DWP+ SPDLNP++ ++ +L A +K + + SLKQ + A + P ++++ + +
Sbjct: 384 DWPARSPDLNPIE-NLWGILVRIVYAQNKTYPTVASLKQGILDAWKSIPDNQLKSLVRSM 442
Query: 474 PQRLKDCIAANGD 436
RL + I G+
Sbjct: 443 EDRLFENIRTQGN 455
>U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical
protein R05G6.2 protein.
Length = 339
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = -3
Query: 642 PSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNWPQRL 463
P SPDL P DY + L K+ D+ E LK + ++ + I P +
Sbjct: 267 PPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFFSSRSPDFFSRGIMMLPSKW 326
Query: 462 KDCIAANGDH 433
+ + NG++
Sbjct: 327 QQVVDTNGEY 336
>U53139-13|AAK18939.1| 334|Caenorhabditis elegans Hypothetical
protein F18E3.7a protein.
Length = 334
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 561 DNLESLKQSVRL---AVTNFPMERVRASIDNWPQRLKDCI 451
DNLESLKQ R V NF R +D +P+ K CI
Sbjct: 95 DNLESLKQQQRAYGDIVYNFRFLDDRERLDIFPEPSKHCI 134
>AB275892-1|BAF34315.1| 334|Caenorhabditis elegans D-aspartate
oxidase protein.
Length = 334
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -3
Query: 561 DNLESLKQSVRL---AVTNFPMERVRASIDNWPQRLKDCI 451
DNLESLKQ R V NF R +D +P+ K CI
Sbjct: 95 DNLESLKQQQRAYGDIVYNFRFLDDRERLDIFPEPSKHCI 134
>AL117195-6|CAB55013.2| 503|Caenorhabditis elegans Hypothetical
protein Y57A10A.8 protein.
Length = 503
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -3
Query: 681 ETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514
E++ D+ E P P L P+DYD +D E ++VRL++ +
Sbjct: 307 ESDTDDVEFVESLPGK-PKLEPIDYDYDQYFNRDVSYNNYDQEEVENRNVRLSIAS 361
>AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical
protein Y49F6A.4 protein.
Length = 514
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/68 (26%), Positives = 28/68 (41%)
Frame = -3
Query: 642 PSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNWPQRL 463
P SPDL P DY + L K+ D+ E LK + ++ + I P +
Sbjct: 242 PPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFFSSRSPDFFSRGIMMLPSKW 301
Query: 462 KDCIAANG 439
+ + NG
Sbjct: 302 QQVVDTNG 309
>U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical
protein D1044.7 protein.
Length = 400
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 161 LTKNNNFVCPLMCPPSD 111
LT NNNF PL C P D
Sbjct: 26 LTSNNNFNQPLTCTPQD 42
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,818,307
Number of Sequences: 27780
Number of extensions: 290931
Number of successful extensions: 568
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -