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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1001
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical ...    89   3e-18
X01005-1|CAA25498.1|  273|Caenorhabditis elegans protein ( Caeno...    46   3e-05
U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical pr...    46   3e-05
AF125450-4|AAD12818.1|  343|Caenorhabditis elegans Hypothetical ...    46   3e-05
AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical ...    46   3e-05
AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical ...    46   3e-05
AF016682-7|AAB66191.2|  343|Caenorhabditis elegans Hypothetical ...    46   3e-05
U39743-1|AAA80436.2|  314|Caenorhabditis elegans Hypothetical pr...    46   3e-05
U49941-9|AAB53871.1|  141|Caenorhabditis elegans Hypothetical pr...    39   0.003
U23174-5|AAC46711.1|  329|Caenorhabditis elegans Hypothetical pr...    39   0.003
AF106576-3|AAK68401.1|  329|Caenorhabditis elegans Hypothetical ...    39   0.003
AC006671-2|AAO21381.1|  459|Caenorhabditis elegans Nuclear hormo...    38   0.005
U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U53139-13|AAK18939.1|  334|Caenorhabditis elegans Hypothetical p...    28   5.6  
AB275892-1|BAF34315.1|  334|Caenorhabditis elegans D-aspartate o...    28   5.6  
AL117195-6|CAB55013.2|  503|Caenorhabditis elegans Hypothetical ...    28   7.4  
AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical ...    28   7.4  
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical
           protein H28G03.4 protein.
          Length = 459

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 38/78 (48%), Positives = 55/78 (70%)
 Frame = -3

Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514
           Q+W E+N  D I    WP SSPDLNP+DY + SVLE+ ACSK H N++SLK S++ A   
Sbjct: 321 QAWCESNFPDFIAFNQWPPSSPDLNPMDYSVWSVLEAKACSKPHRNIDSLKDSLKKAWDE 380

Query: 513 FPMERVRASIDNWPQRLK 460
             +  +RA++D++P+RL+
Sbjct: 381 LDINYLRATVDSFPRRLE 398



 Score = 31.9 bits (69), Expect = 0.45
 Identities = 12/24 (50%), Positives = 20/24 (83%)
 Frame = -3

Query: 498 VRASIDNWPQRLKDCIAANGDHFE 427
           +RA++D +P+R++ CI A+GD FE
Sbjct: 425 LRATVDAFPKRVRVCIEADGDIFE 448


>X01005-1|CAA25498.1|  273|Caenorhabditis elegans protein (
           Caenorhabditis eleganstransposable element Tc1. ).
          Length = 273

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 28/85 (32%), Positives = 42/85 (49%)
 Frame = -3

Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514
           +SW +     L+   DWPS SPDLNP+++ +   LE      R  N ++    +  A   
Sbjct: 188 RSWFQRRHVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 243

Query: 513 FPMERVRASIDNWPQRLKDCIAANG 439
            PM  +   ID+ P+R +  I ANG
Sbjct: 244 IPMSVIHKLIDSMPRRCQAVIDANG 268


>U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical
           protein F18C5.7 protein.
          Length = 343

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 28/85 (32%), Positives = 42/85 (49%)
 Frame = -3

Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514
           +SW +     L+   DWPS SPDLNP+++ +   LE      R  N ++    +  A   
Sbjct: 258 RSWFQRRRVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 313

Query: 513 FPMERVRASIDNWPQRLKDCIAANG 439
            PM  +   ID+ P+R +  I ANG
Sbjct: 314 IPMSVIHKLIDSMPRRCQAVIDANG 338


>AF125450-4|AAD12818.1|  343|Caenorhabditis elegans Hypothetical
           protein Y39F10A.4 protein.
          Length = 343

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 28/85 (32%), Positives = 42/85 (49%)
 Frame = -3

Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514
           +SW +     L+   DWPS SPDLNP+++ +   LE      R  N ++    +  A   
Sbjct: 258 RSWFQRRHVHLL---DWPSQSPDLNPIEH-LWEKLERRLGGIRASNADAKFNQLENAWKA 313

Query: 513 FPMERVRASIDNWPQRLKDCIAANG 439
            PM  +   ID+ P+R +  I ANG
Sbjct: 314 IPMSVIHKLIDSMPRRCQAVIDANG 338


>AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.9 protein.
          Length = 273

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 28/85 (32%), Positives = 42/85 (49%)
 Frame = -3

Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514
           +SW +     L+   DWPS SPDLNP+++ +   LE      R  N ++    +  A   
Sbjct: 188 RSWFQRRRVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 243

Query: 513 FPMERVRASIDNWPQRLKDCIAANG 439
            PM  +   ID+ P+R +  I ANG
Sbjct: 244 IPMSVIHKLIDSMPRRCQAVIDANG 268


>AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.1 protein.
          Length = 273

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 28/85 (32%), Positives = 42/85 (49%)
 Frame = -3

Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514
           +SW +     L+   DWPS SPDLNP+++ +   LE      R  N ++    +  A   
Sbjct: 188 RSWFQRRRVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 243

Query: 513 FPMERVRASIDNWPQRLKDCIAANG 439
            PM  +   ID+ P+R +  I ANG
Sbjct: 244 IPMSVIHKLIDSMPRRCQAVIDANG 268


>AF016682-7|AAB66191.2|  343|Caenorhabditis elegans Hypothetical
           protein T07D3.8 protein.
          Length = 343

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 28/85 (32%), Positives = 42/85 (49%)
 Frame = -3

Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514
           +SW +     L+   DWPS SPDLNP+++ +   LE      R  N ++    +  A   
Sbjct: 258 RSWFQRRHVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 313

Query: 513 FPMERVRASIDNWPQRLKDCIAANG 439
            PM  +   ID+ P+R +  I ANG
Sbjct: 314 IPMSVIHKLIDSMPRRCQAVIDANG 338


>U39743-1|AAA80436.2|  314|Caenorhabditis elegans Hypothetical
           protein R173.2 protein.
          Length = 314

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 28/85 (32%), Positives = 42/85 (49%)
 Frame = -3

Query: 693 QSWLETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514
           +SW +     L+   DWPS SPDLNP+++ +   LE      R  N ++    +  A   
Sbjct: 229 RSWFQRRRVHLL---DWPSQSPDLNPIEH-LWEELERRLGGIRASNADAKFNQLENAWKA 284

Query: 513 FPMERVRASIDNWPQRLKDCIAANG 439
            PM  +   ID+ P+R +  I ANG
Sbjct: 285 IPMSVIHKLIDSMPRRCQAFIDANG 309


>U49941-9|AAB53871.1|  141|Caenorhabditis elegans Hypothetical
           protein K10B3.2 protein.
          Length = 141

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
 Frame = -3

Query: 648 DWPSSSPDLNPLDYDI*SVLEST--ACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNW 475
           DWP+ SPDLNP++ ++  +L     A +K +  + SLKQ +  A  + P  ++++ + + 
Sbjct: 66  DWPARSPDLNPIE-NLWGILVRIVYAQNKTYPTVASLKQGILDAWKSIPDNQLKSLVRSM 124

Query: 474 PQRLKDCIAANGD 436
             RL + I   G+
Sbjct: 125 EDRLFEIIRTQGN 137


>U23174-5|AAC46711.1|  329|Caenorhabditis elegans Hypothetical
           protein R10H1.3 protein.
          Length = 329

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
 Frame = -3

Query: 648 DWPSSSPDLNPLDYDI*SVLEST--ACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNW 475
           DWP+ SPDLNP++ ++  +L     A +K +  + SLKQ +  A  + P  ++++ + + 
Sbjct: 254 DWPARSPDLNPIE-NLWGILVRIVYAQNKTYPTVASLKQGILDAWKSIPDNQLKSLVRSM 312

Query: 474 PQRLKDCIAANGD 436
             RL + I   G+
Sbjct: 313 EDRLFEIIRTQGN 325


>AF106576-3|AAK68401.1|  329|Caenorhabditis elegans Hypothetical
           protein W07E6.6 protein.
          Length = 329

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
 Frame = -3

Query: 648 DWPSSSPDLNPLDYDI*SVLEST--ACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNW 475
           DWP+ SPDLNP++ ++  +L     A +K +  + SLKQ +  A  + P  ++++ + + 
Sbjct: 254 DWPARSPDLNPIE-NLWGILVRIVYAQNKTYPTVASLKQGILDAWKSIPDNQLKSLVRSM 312

Query: 474 PQRLKDCIAANGD 436
             RL + I   G+
Sbjct: 313 EDRLFEIIRTQGN 325


>AC006671-2|AAO21381.1|  459|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 88, isoform b protein.
          Length = 459

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
 Frame = -3

Query: 648 DWPSSSPDLNPLDYDI*SVLEST--ACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNW 475
           DWP+ SPDLNP++ ++  +L     A +K +  + SLKQ +  A  + P  ++++ + + 
Sbjct: 384 DWPARSPDLNPIE-NLWGILVRIVYAQNKTYPTVASLKQGILDAWKSIPDNQLKSLVRSM 442

Query: 474 PQRLKDCIAANGD 436
             RL + I   G+
Sbjct: 443 EDRLFENIRTQGN 455


>U58746-8|AAB00629.1|  339|Caenorhabditis elegans Hypothetical
           protein R05G6.2 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/70 (25%), Positives = 30/70 (42%)
 Frame = -3

Query: 642 PSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNWPQRL 463
           P  SPDL P DY +   L      K+ D+ E LK  +    ++   +     I   P + 
Sbjct: 267 PPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFFSSRSPDFFSRGIMMLPSKW 326

Query: 462 KDCIAANGDH 433
           +  +  NG++
Sbjct: 327 QQVVDTNGEY 336


>U53139-13|AAK18939.1|  334|Caenorhabditis elegans Hypothetical
           protein F18E3.7a protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 561 DNLESLKQSVRL---AVTNFPMERVRASIDNWPQRLKDCI 451
           DNLESLKQ  R     V NF     R  +D +P+  K CI
Sbjct: 95  DNLESLKQQQRAYGDIVYNFRFLDDRERLDIFPEPSKHCI 134


>AB275892-1|BAF34315.1|  334|Caenorhabditis elegans D-aspartate
           oxidase protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 561 DNLESLKQSVRL---AVTNFPMERVRASIDNWPQRLKDCI 451
           DNLESLKQ  R     V NF     R  +D +P+  K CI
Sbjct: 95  DNLESLKQQQRAYGDIVYNFRFLDDRERLDIFPEPSKHCI 134


>AL117195-6|CAB55013.2|  503|Caenorhabditis elegans Hypothetical
           protein Y57A10A.8 protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -3

Query: 681 ETNVSDLIRAEDWPSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTN 514
           E++  D+   E  P   P L P+DYD             +D  E   ++VRL++ +
Sbjct: 307 ESDTDDVEFVESLPGK-PKLEPIDYDYDQYFNRDVSYNNYDQEEVENRNVRLSIAS 361


>AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical
           protein Y49F6A.4 protein.
          Length = 514

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/68 (26%), Positives = 28/68 (41%)
 Frame = -3

Query: 642 PSSSPDLNPLDYDI*SVLESTACSKRHDNLESLKQSVRLAVTNFPMERVRASIDNWPQRL 463
           P  SPDL P DY +   L      K+ D+ E LK  +    ++   +     I   P + 
Sbjct: 242 PPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEHLKTELSTFFSSRSPDFFSRGIMMLPSKW 301

Query: 462 KDCIAANG 439
           +  +  NG
Sbjct: 302 QQVVDTNG 309


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -1

Query: 161 LTKNNNFVCPLMCPPSD 111
           LT NNNF  PL C P D
Sbjct: 26  LTSNNNFNQPLTCTPQD 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,818,307
Number of Sequences: 27780
Number of extensions: 290931
Number of successful extensions: 568
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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