Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1000
         (496 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    28   0.053
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    24   0.66 
AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    21   4.6  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   6.1  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    21   6.1  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   6.1  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   6.1  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   6.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   8.1  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 0.053
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +1

Query: 250 PTKRRRCSPFAASPSTSPGLK-----TSESKPSSFGESVSAPVKITPERMAQE 393
           P  +   +P ++S  TSP        TS   P+S   + SAP+ I  +R A +
Sbjct: 13  PAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAPLHIPAKRAAYD 65


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 0.66
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +2

Query: 317 QNRNHLHLENPLVHL*KLPQNAWHKRFMMRLNDCIDVDSCAWPTALLHH---AHH 472
           +  N LH  +  +H     QN  H+     +N C  +   +   A+LHH   +HH
Sbjct: 301 EQMNLLHSNDLNMHQQHHQQNMSHEELSAMVNRCHPLSLSSDHQAMLHHNPMSHH 355



 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 344 SPNEDGFDSDVFNPGLVLGLAANG 273
           SP    F S + N G+  G+A NG
Sbjct: 43  SPQGASFGSSMLNSGMPGGMAMNG 66


>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 32  LKHRTLL*LENELYIFFVYYLYGA*Y 109
           +KH   L L N+  I F YY Y A Y
Sbjct: 46  VKHFHPLALSNKNAIDFNYYYYAATY 71


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 201 RHFLFTPNEILWF 163
           RH L T N+++WF
Sbjct: 183 RHGLETLNQLIWF 195


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -3

Query: 98  HTGNTRKKYTIRFQVTVKSDVLNLKRLFCTFV 3
           H      KYT R+       +L+ KRL   ++
Sbjct: 26  HRSTRDDKYTTRYDNVDVDRILHSKRLLLNYI 57


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 355 APVKITPERMAQEIYDEIKRLH 420
           APVKI+ + +   +    K+LH
Sbjct: 488 APVKISVQEVLNRVRKPTKKLH 509


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 247 LPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESV 351
           LPT    CS  ++SP+ S   ++S S  SS+  ++
Sbjct: 191 LPTPT--CSEASSSPTPSHSSESSFSAASSYTNTI 223


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +2

Query: 68  LYIFFVYYLY 97
           +Y+F VYY+Y
Sbjct: 151 IYLFTVYYIY 160


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -3

Query: 257  FVGNCALDSQSRFLFNVAHAIFFL 186
            FV    +D+ + F +N+   +FF+
Sbjct: 935  FVAAFQIDNWTSFYYNIIPILFFM 958


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -3

Query: 257  FVGNCALDSQSRFLFNVAHAIFFL 186
            FV    +D+ + F +N+   +FF+
Sbjct: 935  FVAAFQIDNWTSFYYNIIPILFFM 958


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -3

Query: 257  FVGNCALDSQSRFLFNVAHAIFFL 186
            FV    +D+ + F +N+   +FF+
Sbjct: 935  FVAAFQIDNWTSFYYNIIPILFFM 958


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -3

Query: 257  FVGNCALDSQSRFLFNVAHAIFFL 186
            FV    +D+ + F +N+   +FF+
Sbjct: 935  FVAAFQIDNWTSFYYNIIPILFFM 958


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 199 PFSFYAQRNPLVYVYVNEFV 140
           PF +Y +  PL Y    +FV
Sbjct: 23  PFGYYHEEPPLFYEERPDFV 42


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,426
Number of Sequences: 336
Number of extensions: 2745
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11630247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)