BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1000 (496 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 10_08_0674 + 19788198-19789817 30 0.89 05_03_0375 - 13244887-13244961,13245084-13245215,13247018-132471... 30 0.89 01_06_0433 - 29311749-29311859,29311958-29312116,29312208-293123... 29 2.7 03_02_0603 - 9786761-9786856,9787189-9787269,9787366-9787431,978... 28 3.6 03_02_0354 + 7760124-7761407,7762802-7762858 28 3.6 10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010 28 4.7 09_06_0053 - 20537433-20537833,20537910-20538456 28 4.7 08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767 27 6.3 04_03_0264 - 13619329-13621708,13621742-13621830 27 6.3 01_06_0781 + 31962661-31963089,31963174-31963228,31964310-319645... 27 6.3 07_01_0878 + 7288950-7289231 27 8.3 05_04_0186 + 18866762-18866949,18867207-18867345,18868068-188682... 27 8.3 >10_08_0674 + 19788198-19789817 Length = 539 Score = 30.3 bits (65), Expect = 0.89 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 8/61 (13%) Frame = -2 Query: 432 LSTSMQSFNLIINLLCHAFWGNFHRCTNGFSK*R--------WFRF*CF*PRTCAWTCCK 277 L+++ + NL+I LL + HR T GFS R W R +CA C + Sbjct: 236 LASAWANLNLVIFLLAFVYVSGVHRDTGGFSLPRKMFKDVDGWVRLVRLAAESCASVCLE 295 Query: 276 W 274 W Sbjct: 296 W 296 >05_03_0375 - 13244887-13244961,13245084-13245215,13247018-13247110, 13247196-13247355,13247471-13247580,13248259-13248314, 13249115-13249880 Length = 463 Score = 30.3 bits (65), Expect = 0.89 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 7/89 (7%) Frame = +1 Query: 196 MACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITP 375 + AT +L S+ QLP R S A + G+ S +P SV A + Sbjct: 13 VTAATFSPSLPLLSRYQLPRAHRAASTVAFAARRFRGVNPSSDRPRGRRASVPAAPTTSA 72 Query: 376 ERM-------AQEIYDEIKRLHRRGQLRL 441 R + E+ RLHRR +LRL Sbjct: 73 ARDDGGGGGGIDALEAELWRLHRRAELRL 101 >01_06_0433 - 29311749-29311859,29311958-29312116,29312208-29312315, 29312449-29312531,29312617-29312786,29312833-29312903, 29313170-29313302,29313483-29313749,29313865-29313969, 29314053-29314144,29314263-29314363,29314426-29314552, 29315025-29315140,29315222-29315291,29315476-29315685 Length = 640 Score = 28.7 bits (61), Expect = 2.7 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Frame = -3 Query: 221 FLFNVAHAIFFLRPTKSSGLRICQRICFNY---EYKKMKNNIKP 99 F F ++ A+FFL+ K + R NY EYK M N + P Sbjct: 250 FFFVISWAVFFLQFWKRKNSAVLARWGINYSFSEYKTMGNELDP 293 >03_02_0603 - 9786761-9786856,9787189-9787269,9787366-9787431, 9788056-9788610,9788693-9788857,9789110-9789217, 9789905-9790109,9790347-9790434,9791590-9792109 Length = 627 Score = 28.3 bits (60), Expect = 3.6 Identities = 11/21 (52%), Positives = 17/21 (80%) Frame = +1 Query: 379 RMAQEIYDEIKRLHRRGQLRL 441 ++AQEIY+EIK+ + G L+L Sbjct: 332 KLAQEIYEEIKKKEQNGLLKL 352 >03_02_0354 + 7760124-7761407,7762802-7762858 Length = 446 Score = 28.3 bits (60), Expect = 3.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +1 Query: 319 ESKPSSFGESVSAPVKITPERMAQEI 396 E + GES APVK P R+ QE+ Sbjct: 19 EEESKGKGESTGAPVKYLPARLRQEV 44 >10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010 Length = 520 Score = 27.9 bits (59), Expect = 4.7 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 5/79 (6%) Frame = +1 Query: 172 DFVGRKKKMAC-ATL----KRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSS 336 + VG + + C T+ K +L E +A ++ RC+P ++ ST S PS Sbjct: 83 EIVGEETRKVCNVTMEHLEKSSLSEEHEAPSYSQALRCTPESSLDSTKRLRTEVSSSPSQ 142 Query: 337 FGESVSAPVKITPERMAQE 393 V+ VK TP ++ Sbjct: 143 TRNGVNIRVKFTPTNQRRD 161 >09_06_0053 - 20537433-20537833,20537910-20538456 Length = 315 Score = 27.9 bits (59), Expect = 4.7 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +1 Query: 250 PTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSA 357 PTKR R P A +P+TS G + + F VS+ Sbjct: 165 PTKRPRARPSATTPTTSSGDQQMVTVAERFPREVSS 200 >08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767 Length = 1041 Score = 27.5 bits (58), Expect = 6.3 Identities = 17/41 (41%), Positives = 20/41 (48%) Frame = +1 Query: 169 EDFVGRKKKMACATLKRNLDWESKAQLPTKRRRCSPFAASP 291 E +G + A TLK N WE + PT R SP ASP Sbjct: 562 EPKLGVARGAAVPTLKMNPSWEKPSVAPTLELRKSP-PASP 601 >04_03_0264 - 13619329-13621708,13621742-13621830 Length = 822 Score = 27.5 bits (58), Expect = 6.3 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = +2 Query: 398 MMRLNDCIDVDSCAWPTALLHHA 466 ++ ++D IDVD+CA+PT +A Sbjct: 291 VIHMDDVIDVDNCAFPTVCGEYA 313 >01_06_0781 + 31962661-31963089,31963174-31963228,31964310-31964557, 31965080-31965281,31965793-31965912,31965976-31966100, 31966182-31966288,31966726-31966792 Length = 450 Score = 27.5 bits (58), Expect = 6.3 Identities = 18/55 (32%), Positives = 27/55 (49%) Frame = +1 Query: 283 ASPSTSPGLKTSESKPSSFGESVSAPVKITPERMAQEIYDEIKRLHRRGQLRLAN 447 ASP SPGL S+ SS ++S+P + P ++ R RRG L + + Sbjct: 78 ASPYPSPGLPPLPSRRSSSPFAISSPSPLRPAAAMPPA--DLPRPPRRGPLAIVD 130 >07_01_0878 + 7288950-7289231 Length = 93 Score = 27.1 bits (57), Expect = 8.3 Identities = 14/55 (25%), Positives = 23/55 (41%) Frame = +1 Query: 259 RRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPERMAQEIYDEIKRLHR 423 RR PF A+ PG + + K + + + PV + + Q + RL R Sbjct: 20 RRSVQPFGAARPRQPGSRHGDLKAGAGARAAAFPVSAQAQMVVQRELAAVGRLSR 74 >05_04_0186 + 18866762-18866949,18867207-18867345,18868068-18868295, 18869023-18869081,18869411-18869482,18870239-18870287, 18870431-18870661,18872018-18872187,18872274-18872478, 18872826-18873494,18873592-18873819,18873901-18874689 Length = 1008 Score = 27.1 bits (57), Expect = 8.3 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +1 Query: 346 SVSAPVKITPERMAQEIYDEIKRLHRRGQLRLAN 447 SV+ PV+I + YD+ KR + L+L N Sbjct: 242 SVTGPVRIMDPHLVSTFYDDFKRSYLHCTLQLEN 275 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,898,893 Number of Sequences: 37544 Number of extensions: 252219 Number of successful extensions: 793 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 778 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 792 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1035514020 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -