Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1000
(496 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0674 + 19788198-19789817 30 0.89
05_03_0375 - 13244887-13244961,13245084-13245215,13247018-132471... 30 0.89
01_06_0433 - 29311749-29311859,29311958-29312116,29312208-293123... 29 2.7
03_02_0603 - 9786761-9786856,9787189-9787269,9787366-9787431,978... 28 3.6
03_02_0354 + 7760124-7761407,7762802-7762858 28 3.6
10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010 28 4.7
09_06_0053 - 20537433-20537833,20537910-20538456 28 4.7
08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767 27 6.3
04_03_0264 - 13619329-13621708,13621742-13621830 27 6.3
01_06_0781 + 31962661-31963089,31963174-31963228,31964310-319645... 27 6.3
07_01_0878 + 7288950-7289231 27 8.3
05_04_0186 + 18866762-18866949,18867207-18867345,18868068-188682... 27 8.3
>10_08_0674 + 19788198-19789817
Length = 539
Score = 30.3 bits (65), Expect = 0.89
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Frame = -2
Query: 432 LSTSMQSFNLIINLLCHAFWGNFHRCTNGFSK*R--------WFRF*CF*PRTCAWTCCK 277
L+++ + NL+I LL + HR T GFS R W R +CA C +
Sbjct: 236 LASAWANLNLVIFLLAFVYVSGVHRDTGGFSLPRKMFKDVDGWVRLVRLAAESCASVCLE 295
Query: 276 W 274
W
Sbjct: 296 W 296
>05_03_0375 -
13244887-13244961,13245084-13245215,13247018-13247110,
13247196-13247355,13247471-13247580,13248259-13248314,
13249115-13249880
Length = 463
Score = 30.3 bits (65), Expect = 0.89
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Frame = +1
Query: 196 MACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITP 375
+ AT +L S+ QLP R S A + G+ S +P SV A +
Sbjct: 13 VTAATFSPSLPLLSRYQLPRAHRAASTVAFAARRFRGVNPSSDRPRGRRASVPAAPTTSA 72
Query: 376 ERM-------AQEIYDEIKRLHRRGQLRL 441
R + E+ RLHRR +LRL
Sbjct: 73 ARDDGGGGGGIDALEAELWRLHRRAELRL 101
>01_06_0433 -
29311749-29311859,29311958-29312116,29312208-29312315,
29312449-29312531,29312617-29312786,29312833-29312903,
29313170-29313302,29313483-29313749,29313865-29313969,
29314053-29314144,29314263-29314363,29314426-29314552,
29315025-29315140,29315222-29315291,29315476-29315685
Length = 640
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -3
Query: 221 FLFNVAHAIFFLRPTKSSGLRICQRICFNY---EYKKMKNNIKP 99
F F ++ A+FFL+ K + R NY EYK M N + P
Sbjct: 250 FFFVISWAVFFLQFWKRKNSAVLARWGINYSFSEYKTMGNELDP 293
>03_02_0603 -
9786761-9786856,9787189-9787269,9787366-9787431,
9788056-9788610,9788693-9788857,9789110-9789217,
9789905-9790109,9790347-9790434,9791590-9792109
Length = 627
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 379 RMAQEIYDEIKRLHRRGQLRL 441
++AQEIY+EIK+ + G L+L
Sbjct: 332 KLAQEIYEEIKKKEQNGLLKL 352
>03_02_0354 + 7760124-7761407,7762802-7762858
Length = 446
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 319 ESKPSSFGESVSAPVKITPERMAQEI 396
E + GES APVK P R+ QE+
Sbjct: 19 EEESKGKGESTGAPVKYLPARLRQEV 44
>10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010
Length = 520
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Frame = +1
Query: 172 DFVGRKKKMAC-ATL----KRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSS 336
+ VG + + C T+ K +L E +A ++ RC+P ++ ST S PS
Sbjct: 83 EIVGEETRKVCNVTMEHLEKSSLSEEHEAPSYSQALRCTPESSLDSTKRLRTEVSSSPSQ 142
Query: 337 FGESVSAPVKITPERMAQE 393
V+ VK TP ++
Sbjct: 143 TRNGVNIRVKFTPTNQRRD 161
>09_06_0053 - 20537433-20537833,20537910-20538456
Length = 315
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 250 PTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSA 357
PTKR R P A +P+TS G + + F VS+
Sbjct: 165 PTKRPRARPSATTPTTSSGDQQMVTVAERFPREVSS 200
>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
Length = 1041
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +1
Query: 169 EDFVGRKKKMACATLKRNLDWESKAQLPTKRRRCSPFAASP 291
E +G + A TLK N WE + PT R SP ASP
Sbjct: 562 EPKLGVARGAAVPTLKMNPSWEKPSVAPTLELRKSP-PASP 601
>04_03_0264 - 13619329-13621708,13621742-13621830
Length = 822
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 398 MMRLNDCIDVDSCAWPTALLHHA 466
++ ++D IDVD+CA+PT +A
Sbjct: 291 VIHMDDVIDVDNCAFPTVCGEYA 313
>01_06_0781 +
31962661-31963089,31963174-31963228,31964310-31964557,
31965080-31965281,31965793-31965912,31965976-31966100,
31966182-31966288,31966726-31966792
Length = 450
Score = 27.5 bits (58), Expect = 6.3
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 283 ASPSTSPGLKTSESKPSSFGESVSAPVKITPERMAQEIYDEIKRLHRRGQLRLAN 447
ASP SPGL S+ SS ++S+P + P ++ R RRG L + +
Sbjct: 78 ASPYPSPGLPPLPSRRSSSPFAISSPSPLRPAAAMPPA--DLPRPPRRGPLAIVD 130
>07_01_0878 + 7288950-7289231
Length = 93
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/55 (25%), Positives = 23/55 (41%)
Frame = +1
Query: 259 RRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPERMAQEIYDEIKRLHR 423
RR PF A+ PG + + K + + + PV + + Q + RL R
Sbjct: 20 RRSVQPFGAARPRQPGSRHGDLKAGAGARAAAFPVSAQAQMVVQRELAAVGRLSR 74
>05_04_0186 +
18866762-18866949,18867207-18867345,18868068-18868295,
18869023-18869081,18869411-18869482,18870239-18870287,
18870431-18870661,18872018-18872187,18872274-18872478,
18872826-18873494,18873592-18873819,18873901-18874689
Length = 1008
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 346 SVSAPVKITPERMAQEIYDEIKRLHRRGQLRLAN 447
SV+ PV+I + YD+ KR + L+L N
Sbjct: 242 SVTGPVRIMDPHLVSTFYDDFKRSYLHCTLQLEN 275
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,898,893
Number of Sequences: 37544
Number of extensions: 252219
Number of successful extensions: 793
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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