Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1000
         (496 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)               45   3e-05
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)                  31   0.52 
SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_25483| Best HMM Match : zf-B_box (HMM E-Value=0.21)                 29   2.8  
SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_47465| Best HMM Match : EGF_CA (HMM E-Value=2.4e-08)                27   6.4  
SB_11325| Best HMM Match : Gurmarin (HMM E-Value=3.3)                  27   6.4  
SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_13598| Best HMM Match : Gurmarin (HMM E-Value=3.3)                  27   6.4  
SB_13044| Best HMM Match : Vps26 (HMM E-Value=0)                       27   8.5  
SB_51925| Best HMM Match : DIX (HMM E-Value=0.75)                      27   8.5  

>SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1125

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
 Frame = +1

Query: 184 RKKKMACATLKRNLDWE---SKAQLPT-KRRRCSPFAASPSTSPGLKTSESKPSSFGESV 351
           R  KMACATLKR+ +++   S    P+ KRRRC P A S S S    +S +  S F E  
Sbjct: 151 RFSKMACATLKRSYEFDPLLSPQHQPSPKRRRCIPMATSSSPS----SSSNTDSPFLEIT 206

Query: 352 SAPVKITPERMAQEIYDEIKRLHRRGQLR 438
               + + E+++  ++ E KRL RR  L+
Sbjct: 207 P---RYSQEQLSTNLHMEWKRLQRRKHLK 232


>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
          Length = 1600

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 21/88 (23%), Positives = 37/88 (42%)
 Frame = +1

Query: 142  QIR*HIRKPEDFVGRKKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSE 321
            Q R    KP+D   RK K++C T K       K +   +  +    A+S +     ++S+
Sbjct: 979  QARPRPSKPQDQASRKTKVSCMTKKDQYQASRKTKQVARPSKPQDQASSKTQD---QSSD 1035

Query: 322  SKPSSFGESVSAPVKITPERMAQEIYDE 405
             +   +   +  P+KI P  + Q    E
Sbjct: 1036 GREGGYSRYLMLPLKIIPAVIIQRALPE 1063


>SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1511

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = -3

Query: 353 LTDSPNEDGFDSDVFNP----GLVLGLAANGEHLLLFVGNCALDSQSRFLFNVAHAIFFL 186
           + +S + DG+DSD F+        LG   N +  L  V     D++S+ L+N+AH I   
Sbjct: 498 VANSDDSDGWDSDEFDDEDDDNATLGEDRNKKQELDLVFP---DARSKKLYNIAHEILTT 554

Query: 185 RPTKSSGLRICQRICF 138
                  LR+  ++ F
Sbjct: 555 ERAYVKRLRLLDKVFF 570


>SB_25483| Best HMM Match : zf-B_box (HMM E-Value=0.21)
          Length = 258

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +1

Query: 181 GRKKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAP 360
           G++KK     LK   D   + ++ +KR+R  P     ST P      +K +  G+  S  
Sbjct: 7   GKRKKSVEELLKEGRDLLDRQEVKSKRKR-KPVRFLFSTDPATGLRNNKGTYKGQKKSKE 65

Query: 361 VKITPE 378
            ++ PE
Sbjct: 66  KRLNPE 71


>SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 310 KTSESKPSSFGESVSAPVKITPERMAQEIYDEIKR 414
           +T ESK S    S+S PVK+  E+    +Y+ +K+
Sbjct: 335 ETKESKISRSPISISVPVKVGDEKTKGYVYNVLKK 369


>SB_47465| Best HMM Match : EGF_CA (HMM E-Value=2.4e-08)
          Length = 263

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 389 KRFMMRLNDCIDVDSCAWPTALLHHA 466
           K F+     C+D+D C +P     HA
Sbjct: 142 KGFVREPEGCVDIDECVYPRVCSEHA 167


>SB_11325| Best HMM Match : Gurmarin (HMM E-Value=3.3)
          Length = 194

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -3

Query: 209 VAHAIFFLRPTKSSGLRICQRICFNYEYKKMKNNIKPHTGNTRKKYTIRFQV-TVKSDVL 33
           V H    L     SGL +C  I  +   K+    +K  T N  + ++ + +V   KSDVL
Sbjct: 128 VTHQAMLLLKVMVSGLVVCPIIEISANQKRAWIALKQKTANHLEGFSKKLEVLNPKSDVL 187

Query: 32  NLKRLF 15
            + + F
Sbjct: 188 AVLKFF 193


>SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 210 CSTRHFLFTPNEILWFTYMSTNLF*LRI 127
           C +++F+FT N I+W+  +   LF L I
Sbjct: 5   CLSKYFIFTLNFIVWYMVVLAVLFTLEI 32


>SB_13598| Best HMM Match : Gurmarin (HMM E-Value=3.3)
          Length = 194

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -3

Query: 209 VAHAIFFLRPTKSSGLRICQRICFNYEYKKMKNNIKPHTGNTRKKYTIRFQV-TVKSDVL 33
           V H    L     SGL +C  I  +   K+    +K  T N  + ++ + +V   KSDVL
Sbjct: 128 VTHQAMLLLKVMVSGLVVCPIIEISANQKRAWIALKQKTANHLEGFSKKLEVLNPKSDVL 187

Query: 32  NLKRLF 15
            + + F
Sbjct: 188 AVLKFF 193


>SB_13044| Best HMM Match : Vps26 (HMM E-Value=0)
          Length = 669

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -3

Query: 158 ICQRICFNYEYKKMKNNIKPHTG-NTRKKYTIRFQVTVK-SDV 36
           + Q +C+++E+  ++   + +TG N R +Y +R  +  + SDV
Sbjct: 98  LTQSVCYDFEFVNVEKPYETYTGANVRLRYFLRVTIVRRLSDV 140


>SB_51925| Best HMM Match : DIX (HMM E-Value=0.75)
          Length = 256

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = +1

Query: 154 HIRKPEDFVGRKKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPS 333
           H+ KPE  +    +   A +   +D E   Q   +++     +AS ST+     SE  P 
Sbjct: 133 HLTKPEVTLVMNAEDTPANVA--MDVEENQQEVVRKKAEESESASESTATEATPSEVSPI 190

Query: 334 SFGESVSAPVKITPERMA 387
               S  +P+K TP  ++
Sbjct: 191 ETTPSEVSPIKTTPSEVS 208


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,357,085
Number of Sequences: 59808
Number of extensions: 312200
Number of successful extensions: 1003
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)