Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1000
(496 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC005051-1|AAH05051.1| 203|Homo sapiens chromosome 6 open readi... 38 0.014
BC003042-1|AAH03042.1| 203|Homo sapiens chromosome 6 open readi... 38 0.014
BC000764-1|AAH00764.1| 203|Homo sapiens chromosome 6 open readi... 38 0.014
AL133211-3|CAI21541.1| 203|Homo sapiens protein ( Human DNA seq... 38 0.014
AK222701-1|BAD96421.1| 203|Homo sapiens hypothetical protein FL... 38 0.014
AK001204-1|BAA91551.1| 135|Homo sapiens protein ( Homo sapiens ... 38 0.014
BC087848-1|AAH87848.1| 261|Homo sapiens LGI4 protein protein. 31 2.9
AY358121-1|AAQ88488.1| 261|Homo sapiens LGI4 protein. 31 2.9
AJ487959-1|CAD32306.1| 537|Homo sapiens LGI1-like protein 3 pro... 31 2.9
AJ487519-1|CAD31787.1| 537|Homo sapiens leucine-rich glioma ina... 31 2.9
AF467954-1|AAM49552.1| 537|Homo sapiens LGI4 protein. 31 2.9
AK000943-1|BAA91437.1| 530|Homo sapiens protein ( Homo sapiens ... 29 8.9
>BC005051-1|AAH05051.1| 203|Homo sapiens chromosome 6 open reading
frame 166 protein.
Length = 203
Score = 38.3 bits (85), Expect = 0.014
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Frame = +1
Query: 196 MAC-ATLKRNLDWES-KAQLPTKRRRCSPFAA--SPSTSPGLKTSESKPSSFGESVSAPV 363
MAC ATLKR LD++ + KRRRC+P +A S + SP L + + +SF + ++P
Sbjct: 1 MACGATLKRTLDFDPLLSPASPKRRRCAPLSAPTSAAASP-LSAAAATAASFSAAAASPQ 59
Query: 364 K 366
K
Sbjct: 60 K 60
>BC003042-1|AAH03042.1| 203|Homo sapiens chromosome 6 open reading
frame 166 protein.
Length = 203
Score = 38.3 bits (85), Expect = 0.014
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Frame = +1
Query: 196 MAC-ATLKRNLDWES-KAQLPTKRRRCSPFAA--SPSTSPGLKTSESKPSSFGESVSAPV 363
MAC ATLKR LD++ + KRRRC+P +A S + SP L + + +SF + ++P
Sbjct: 1 MACGATLKRTLDFDPLLSPASPKRRRCAPLSAPTSAAASP-LSAAAATAASFSAAAASPQ 59
Query: 364 K 366
K
Sbjct: 60 K 60
>BC000764-1|AAH00764.1| 203|Homo sapiens chromosome 6 open reading
frame 166 protein.
Length = 203
Score = 38.3 bits (85), Expect = 0.014
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Frame = +1
Query: 196 MAC-ATLKRNLDWES-KAQLPTKRRRCSPFAA--SPSTSPGLKTSESKPSSFGESVSAPV 363
MAC ATLKR LD++ + KRRRC+P +A S + SP L + + +SF + ++P
Sbjct: 1 MACGATLKRTLDFDPLLSPASPKRRRCAPLSAPTSAAASP-LSAAAATAASFSAAAASPQ 59
Query: 364 K 366
K
Sbjct: 60 K 60
>AL133211-3|CAI21541.1| 203|Homo sapiens protein ( Human DNA
sequence from clone RP3-486L4 on chromosome 6q14.3-16.1
Contains the 3' end of the ORC3L gene for origin
recognition ).
Length = 203
Score = 38.3 bits (85), Expect = 0.014
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Frame = +1
Query: 196 MAC-ATLKRNLDWES-KAQLPTKRRRCSPFAA--SPSTSPGLKTSESKPSSFGESVSAPV 363
MAC ATLKR LD++ + KRRRC+P +A S + SP L + + +SF + ++P
Sbjct: 1 MACGATLKRTLDFDPLLSPASPKRRRCAPLSAPTSAAASP-LSAAAATAASFSAAAASPQ 59
Query: 364 K 366
K
Sbjct: 60 K 60
>AK222701-1|BAD96421.1| 203|Homo sapiens hypothetical protein
FLJ10342 variant protein.
Length = 203
Score = 38.3 bits (85), Expect = 0.014
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Frame = +1
Query: 196 MAC-ATLKRNLDWES-KAQLPTKRRRCSPFAA--SPSTSPGLKTSESKPSSFGESVSAPV 363
MAC ATLKR LD++ + KRRRC+P +A S + SP L + + +SF + ++P
Sbjct: 1 MACGATLKRTLDFDPLLSPASPKRRRCAPLSAPTSAAASP-LSAAAATAASFSAAAASPQ 59
Query: 364 K 366
K
Sbjct: 60 K 60
>AK001204-1|BAA91551.1| 135|Homo sapiens protein ( Homo sapiens
cDNA FLJ10342 fis, clone NT2RM2000837. ).
Length = 135
Score = 38.3 bits (85), Expect = 0.014
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Frame = +1
Query: 196 MAC-ATLKRNLDWES-KAQLPTKRRRCSPFAA--SPSTSPGLKTSESKPSSFGESVSAPV 363
MAC ATLKR LD++ + KRRRC+P +A S + SP L + + +SF + ++P
Sbjct: 1 MACGATLKRTLDFDPLLSPASPKRRRCAPLSAPTSAAASP-LSAAAATAASFSAAAASPQ 59
Query: 364 K 366
K
Sbjct: 60 K 60
>BC087848-1|AAH87848.1| 261|Homo sapiens LGI4 protein protein.
Length = 261
Score = 30.7 bits (66), Expect = 2.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 383 WHKRFMMRLNDCIDVDSCAWPTALLHHAHHQVDPK 487
W ++M +N + +CA P +L H H +DPK
Sbjct: 168 WLLQWMPTVNASVGTGACAGPASLSHMQLHHLDPK 202
>AY358121-1|AAQ88488.1| 261|Homo sapiens LGI4 protein.
Length = 261
Score = 30.7 bits (66), Expect = 2.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 383 WHKRFMMRLNDCIDVDSCAWPTALLHHAHHQVDPK 487
W ++M +N + +CA P +L H H +DPK
Sbjct: 168 WLLQWMPTVNASVGTGACAGPASLSHMQLHHLDPK 202
>AJ487959-1|CAD32306.1| 537|Homo sapiens LGI1-like protein 3
protein.
Length = 537
Score = 30.7 bits (66), Expect = 2.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 383 WHKRFMMRLNDCIDVDSCAWPTALLHHAHHQVDPK 487
W ++M +N + +CA P +L H H +DPK
Sbjct: 168 WLLQWMPTVNASVGTGACAGPASLSHMQLHHLDPK 202
>AJ487519-1|CAD31787.1| 537|Homo sapiens leucine-rich glioma
inactivated protein 4 protein.
Length = 537
Score = 30.7 bits (66), Expect = 2.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 383 WHKRFMMRLNDCIDVDSCAWPTALLHHAHHQVDPK 487
W ++M +N + +CA P +L H H +DPK
Sbjct: 168 WLLQWMPTVNASVGTGACAGPASLSHMQLHHLDPK 202
>AF467954-1|AAM49552.1| 537|Homo sapiens LGI4 protein.
Length = 537
Score = 30.7 bits (66), Expect = 2.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 383 WHKRFMMRLNDCIDVDSCAWPTALLHHAHHQVDPK 487
W ++M +N + +CA P +L H H +DPK
Sbjct: 168 WLLQWMPTVNASVGTGACAGPASLSHMQLHHLDPK 202
>AK000943-1|BAA91437.1| 530|Homo sapiens protein ( Homo sapiens
cDNA FLJ10081 fis, clone HEMBA1002018. ).
Length = 530
Score = 29.1 bits (62), Expect = 8.9
Identities = 23/77 (29%), Positives = 33/77 (42%)
Frame = +1
Query: 163 KPEDFVGRKKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFG 342
+P D KKK +R+L +E + + ASPS S GL + S P+S
Sbjct: 395 EPRDQDAEKKKKPRDVARRDLAFEVPERGSRPASPAAKLPASPSGSEGLSSVSSSPTS-- 452
Query: 343 ESVSAPVKITPERMAQE 393
S K+T AQ+
Sbjct: 453 ---SPKTKVTTVTSAQK 466
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,085,113
Number of Sequences: 237096
Number of extensions: 1423027
Number of successful extensions: 3762
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3753
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4479766258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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