Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1000
(496 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY255668-1|AAQ96605.1| 167|Caenorhabditis elegans MiRP5 protein. 31 0.61
AF098994-1|AAC67472.2| 167|Caenorhabditis elegans Hypothetical ... 31 0.61
Z78059-3|CAB01486.3| 345|Caenorhabditis elegans Hypothetical pr... 29 1.4
AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical ... 29 1.9
AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical ... 29 1.9
AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily a... 29 1.9
Z78420-2|CAB01710.3| 738|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z74045-3|CAA98551.1| 165|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z74039-7|CAA98506.1| 290|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z68132-2|CAA92220.2| 762|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical pr... 27 5.7
AL117202-29|CAO82059.1| 842|Caenorhabditis elegans Hypothetical... 27 7.5
AC024817-40|AAF59577.4| 967|Caenorhabditis elegans Hypothetical... 27 7.5
Z73102-12|CAA97406.1| 430|Caenorhabditis elegans Hypothetical p... 27 9.9
U55774-2|AAA98009.3| 380|Caenorhabditis elegans Hypothetical pr... 27 9.9
U29537-1|AAK31507.1| 610|Caenorhabditis elegans Vaccinia relate... 27 9.9
AF047657-4|AAK18948.3| 330|Caenorhabditis elegans Serpentine re... 27 9.9
>AY255668-1|AAQ96605.1| 167|Caenorhabditis elegans MiRP5 protein.
Length = 167
Score = 30.7 bits (66), Expect = 0.61
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 187 KKKMACATLKRNLDWESKAQLPTKRRRCSPFAA--SPSTSPGLKTSESKPSSFGESVSAP 360
KKK +T R+ +SK T ++R SP +P +SP + PSS + P
Sbjct: 58 KKKTKKSTKSRSKSLKSKQSAVTPKKRASPIPPQPAPPSSPKPTEESATPSSSFAPSTEP 117
Query: 361 VKITPERM 384
P+++
Sbjct: 118 TPTVPDKV 125
>AF098994-1|AAC67472.2| 167|Caenorhabditis elegans Hypothetical
protein T06A4.2 protein.
Length = 167
Score = 30.7 bits (66), Expect = 0.61
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 187 KKKMACATLKRNLDWESKAQLPTKRRRCSPFAA--SPSTSPGLKTSESKPSSFGESVSAP 360
KKK +T R+ +SK T ++R SP +P +SP + PSS + P
Sbjct: 58 KKKTKKSTKSRSKSLKSKQSAVTPKKRASPIPPQPAPPSSPKPTEESATPSSSFAPSTEP 117
Query: 361 VKITPERM 384
P+++
Sbjct: 118 TPTVPDKV 125
>Z78059-3|CAB01486.3| 345|Caenorhabditis elegans Hypothetical
protein C34B4.2a protein.
Length = 345
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 265 RCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKIT 372
RC P A+ P+ ++ E+K +S G S + P++ T
Sbjct: 224 RCPPQASIPAYYARVRMEETKAASSGNSTAGPIRAT 259
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 211 LKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKIT 372
L +L W+ Q+ + R A SPS+S ++ SSF S+S+P T
Sbjct: 19 LDDDLPWQFDDQIIKENDRLDSAAQSPSSSLFSDFDDACTSSFASSLSSPTFAT 72
>AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical
protein ZK484.4a protein.
Length = 919
Score = 29.1 bits (62), Expect = 1.9
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Frame = +1
Query: 139 KQIR*HIRKPEDFVGRKK------KMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTS 300
+Q + I+KPE ++ K +++ A R+ D S + P KRRR S ++S
Sbjct: 830 RQFQSLIQKPEAYMESLKQKYIESRVSSAKRMRSNDGASTSSRPAKRRR------SNASS 883
Query: 301 PGLKTSESKPSSFGESVSAPVKI 369
P +T+ S SS +S+ +PVK+
Sbjct: 884 PKKQTASSSASS-TKSLKSPVKL 905
>AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical
protein ZK484.4b protein.
Length = 873
Score = 29.1 bits (62), Expect = 1.9
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Frame = +1
Query: 139 KQIR*HIRKPEDFVGRKK------KMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTS 300
+Q + I+KPE ++ K +++ A R+ D S + P KRRR S ++S
Sbjct: 784 RQFQSLIQKPEAYMESLKQKYIESRVSSAKRMRSNDGASTSSRPAKRRR------SNASS 837
Query: 301 PGLKTSESKPSSFGESVSAPVKI 369
P +T+ S SS +S+ +PVK+
Sbjct: 838 PKKQTASSSASS-TKSLKSPVKL 859
>AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily
assigned gene nameprotein 63 protein.
Length = 604
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +1
Query: 262 RRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPER 381
RR SPF++S ST+P +K+ + S F ES+ V +PER
Sbjct: 220 RRRSPFSSSKSTAP-IKSRHYR-SRFSESLEDNVFRSPER 257
>Z78420-2|CAB01710.3| 738|Caenorhabditis elegans Hypothetical
protein F45H11.3 protein.
Length = 738
Score = 28.7 bits (61), Expect = 2.4
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 181 GRKKKMACATLKR--NLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVS 354
G M ATL NL E K T + S AAS ST+P T+ + S G++
Sbjct: 594 GNFHNMIDATLAAFDNLSVEEKIIKETNGKAASNVAASHSTAPTTTTTSGEASGGGQATI 653
Query: 355 APVKITPE 378
+ K++PE
Sbjct: 654 SK-KMSPE 660
>Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical
protein T03D8.6 protein.
Length = 578
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +1
Query: 328 PSSFGES---VSAPVKITPERMAQEIYDEIKRLHR 423
PSSFG + VSA K+ PE +IY++ K LH+
Sbjct: 285 PSSFGVTQLIVSAMSKLFPEGHKDDIYNDPKVLHK 319
>Z74045-3|CAA98551.1| 165|Caenorhabditis elegans Hypothetical
protein T27F2.4 protein.
Length = 165
Score = 27.9 bits (59), Expect = 4.3
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +1
Query: 274 PFAASPSTSPGLKTSESKPSSFGESVSAPVKITPERMAQEIYD-----EIKRLHRR 426
PF +S S G T+ S S ES +AP KI R QEI D K+ HRR
Sbjct: 48 PFESSASL--GTSTTSSSRCSSTESSAAPGKIRRGRPQQEIADGQDAHSQKKRHRR 101
>Z74039-7|CAA98506.1| 290|Caenorhabditis elegans Hypothetical
protein K03B8.7 protein.
Length = 290
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 131 EYKKMKNNIKPHTGNTRKKYTIRFQVTVKSDVLN 30
E ++MKN I + N +K IRF ++SD +N
Sbjct: 110 EVQRMKNEIMEISTNKTRKSEIRFSPPIESDRVN 143
>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical
protein ZK593.5 protein.
Length = 1326
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 250 PTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPER 381
P ++ P AS +T+P K S SKP + S P ++TP++
Sbjct: 175 PRRQSLAPPKKASTTTAPVSKPSLSKPRQ-SLAPSKPAEVTPQK 217
>Z68132-2|CAA92220.2| 762|Caenorhabditis elegans Hypothetical
protein F09C8.2 protein.
Length = 762
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 289 PSTSPGLKTSESKPSSFGESVSAPVKITPERMAQEIYDEIKRL 417
P + P L TS KPS + +AP+K P QE+ E ++L
Sbjct: 477 PVSVPELLTSTKKPSQPAKVPAAPIK-APRLSDQELESESQKL 518
>Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical protein
F40F11.2b protein.
Length = 1607
Score = 27.5 bits (58), Expect = 5.7
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Frame = +1
Query: 178 VGRKKKMACATLKRNLDW---ESKAQLPTKR----RRCSPFAASPSTSPGLKTSESKPSS 336
V K + A A+ K ++D + K QL + R +PFA PS+ P ++ S S
Sbjct: 1352 VSVKGRPAPASRKSSIDTAGKDKKGQLAKNKAAFCNRFNPFANVPSSKPSTSSAVSATPS 1411
Query: 337 FGESVSA--PVKITPER 381
+VSA P TP R
Sbjct: 1412 TSSAVSAKLPTGKTPGR 1428
>Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical protein
F40F11.2a protein.
Length = 1593
Score = 27.5 bits (58), Expect = 5.7
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Frame = +1
Query: 178 VGRKKKMACATLKRNLDW---ESKAQLPTKR----RRCSPFAASPSTSPGLKTSESKPSS 336
V K + A A+ K ++D + K QL + R +PFA PS+ P ++ S S
Sbjct: 1338 VSVKGRPAPASRKSSIDTAGKDKKGQLAKNKAAFCNRFNPFANVPSSKPSTSSAVSATPS 1397
Query: 337 FGESVSA--PVKITPER 381
+VSA P TP R
Sbjct: 1398 TSSAVSAKLPTGKTPGR 1414
>AL117202-29|CAO82059.1| 842|Caenorhabditis elegans Hypothetical
protein Y47D3A.17c protein.
Length = 842
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 226 DWESKAQLPTKRRRCSPF-AASPSTSPGLKTSESKPSSFGESVSAPVKI 369
D + Q P+ CS F ++SPSTS S PSS + KI
Sbjct: 65 DKDPPRQFPSLLTSCSSFYSSSPSTSTYCSLSSLSPSSLPPPLQKSTKI 113
>AC024817-40|AAF59577.4| 967|Caenorhabditis elegans Hypothetical
protein Y54G2A.21 protein.
Length = 967
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -3
Query: 335 EDGFDSDVFNPGLVLGLAANGEHLLLFVGNCALDSQSRFLFNVA 204
+DG+ V N G+V L L +GN + + SR + +A
Sbjct: 400 DDGYTKGVINIGVVGDAGGGSTKLALVIGNVSRPNSSRHVMVIA 443
>Z73102-12|CAA97406.1| 430|Caenorhabditis elegans Hypothetical
protein B0035.11 protein.
Length = 430
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 286 SPSTSPGLKTSESKPSSFGESVSAPVKITPER 381
S +++PG S PSS G S +P K P +
Sbjct: 8 SDASAPGTPVKSSTPSSRGSSPDSPKKQEPSK 39
>U55774-2|AAA98009.3| 380|Caenorhabditis elegans Hypothetical
protein F35G8.1 protein.
Length = 380
Score = 26.6 bits (56), Expect = 9.9
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -1
Query: 349 RILQMKMVSILMFLTQDLCLDLLQMVNIFFSL*VIAP*TPNPDFFLM*HTPFSFYAQR-- 176
R+ + + +++F L LDL ++ + + P N F+ ++ A
Sbjct: 242 RLQTLLLAMVVIFAVSSLPLDLSNVLQDLIVVYQVRPVPDNVRHFIFFFCHWTAMAGTLL 301
Query: 175 NPLVYVYVNE 146
NPLVY Y NE
Sbjct: 302 NPLVYAYYNE 311
>U29537-1|AAK31507.1| 610|Caenorhabditis elegans Vaccinia related
kinase protein 1 protein.
Length = 610
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 271 SPFAASPSTSPGLKTSESKPSSFGESVS--APVKITP 375
SP ++PS+S GL++ GE ++ V ITP
Sbjct: 505 SPTTSTPSSSSGLRSKRKSSEDVGEGITLKTQVLITP 541
>AF047657-4|AAK18948.3| 330|Caenorhabditis elegans Serpentine
receptor, class h protein240 protein.
Length = 330
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 78 FSCITCMGLNIIFHFLIFVIKTNS 149
FSCI C L ++ FL+F+ T S
Sbjct: 192 FSCIFCAMLIVVASFLVFIFLTFS 215
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,693,388
Number of Sequences: 27780
Number of extensions: 246417
Number of successful extensions: 895
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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