Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1000
         (496 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa...    32   0.18 
At2g36720.1 68415.m04505 PHD finger transcription factor, putative     30   0.98 
At1g76810.1 68414.m08938 eukaryotic translation initiation facto...    29   2.3  
At2g46550.1 68415.m05807 expressed protein                             28   3.0  
At5g43740.2 68418.m05348 disease resistance protein (CC-NBS-LRR ...    28   4.0  
At5g43740.1 68418.m05347 disease resistance protein (CC-NBS-LRR ...    28   4.0  
At5g17770.1 68418.m02084 NADH-cytochrome b5 reductase identical ...    27   6.9  
At3g24630.1 68416.m03093 hypothetical protein                          27   6.9  
At5g61460.1 68418.m07712 structural maintenance of chromosomes (...    27   9.2  
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    27   9.2  

>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
           family protein predicted proteins, Arabidopsis thaliana
           ; contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 411

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
 Frame = +1

Query: 217 RNLDWESKAQLPTKRRRC-----------SPFAASPSTSPGLKTSESKPSSFGESVSAPV 363
           RNL  + KA LP   RR             P  ASP TSP  K   S PSS    +S  V
Sbjct: 68  RNLSLKRKASLPNYERRLLLSPSVSETSEKPLVASPITSPYWKRCLSLPSSNSAKLSLVV 127

Query: 364 KITP 375
             TP
Sbjct: 128 STTP 131


>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
          Length = 1007

 Score = 29.9 bits (64), Expect = 0.98
 Identities = 16/67 (23%), Positives = 28/67 (41%)
 Frame = +1

Query: 172 DFVGRKKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESV 351
           D+  ++K+  C   K    + S        + CS    S ++    +TS S P+     V
Sbjct: 365 DYASKEKRFTCKRCKGPFPFSSLGHRGFLCKSCSEVETSQASLAATRTSTSAPACITSPV 424

Query: 352 SAPVKIT 372
            + +KIT
Sbjct: 425 KSRLKIT 431


>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
           family protein / eIF-2 family protein similar to IF2
           protein [Drosophila melanogaster] GI:7108770; contains
           Pfam profile PF03144: Elongation factor Tu domain 2
          Length = 1294

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 226 DWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPE 378
           D E +AQ   K+      + +  + P  +   +KP+  G+ + A VK TPE
Sbjct: 618 DEEEEAQPVVKKELKDAISKAHDSEPEAEKPTAKPAGTGKPLIAAVKATPE 668


>At2g46550.1 68415.m05807 expressed protein
          Length = 397

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
 Frame = +1

Query: 187 KKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPS--TSPGLKT-SESKPSSFGESVSA 357
           K ++A    +R+LD+     LPT ++    +  SP    S GL+  S S  +  G S  +
Sbjct: 188 KDELASLVAQRSLDYVENCDLPTPQKMKRSYYGSPRGFDSDGLRDYSVSGQTIKGTSKGS 247

Query: 358 PVKITPERMAQEIYDEIKRLH--RRGQLR 438
             K  PE  ++    + + L   RR Q R
Sbjct: 248 SCKNRPEASSESDLSKSELLEALRRSQTR 276


>At5g43740.2 68418.m05348 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 862

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 196 MACATLKRNLDWESKAQLPTKRRRCSPFAASPST-SPGLK 312
           + C   +  +DWESK     +RR  SP    PST SPG K
Sbjct: 711 LMCNISEIRIDWESK-----ERRELSPTEILPSTGSPGFK 745


>At5g43740.1 68418.m05347 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 862

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 196 MACATLKRNLDWESKAQLPTKRRRCSPFAASPST-SPGLK 312
           + C   +  +DWESK     +RR  SP    PST SPG K
Sbjct: 711 LMCNISEIRIDWESK-----ERRELSPTEILPSTGSPGFK 745


>At5g17770.1 68418.m02084 NADH-cytochrome b5 reductase identical to
           NADH-cytochrome b5 reductase [Arabidopsis thaliana]
           GI:4240116
          Length = 281

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -3

Query: 212 NVAHAIFFLRPTKSS--GLRICQRICFNYEYKKMKNNIKPHTGNTRKKYTIRFQVTVK 45
           NVA  +F L PT +S  GL I Q I    +  + ++ IKP+T  T      RF++ +K
Sbjct: 61  NVAKFVFEL-PTSTSVLGLPIGQHISCRGKDGQGEDVIKPYTPTTLDSDVGRFELVIK 117


>At3g24630.1 68416.m03093 hypothetical protein
          Length = 724

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 20/94 (21%), Positives = 41/94 (43%)
 Frame = +1

Query: 157 IRKPEDFVGRKKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSS 336
           + +PED + +        L+ +L   S  Q    +R+  P   +   S  L+   S    
Sbjct: 103 VSRPED-IAKDLLRGALDLEESLAMLSSIQEDDSKRK--PMIRNDGRSD-LRFQRSMSDR 158

Query: 337 FGESVSAPVKITPERMAQEIYDEIKRLHRRGQLR 438
           FGE +   + +     +++ Y+E++++ R   LR
Sbjct: 159 FGERIEKRMMVQENVASKDCYEELRKVIRESFLR 192


>At5g61460.1 68418.m07712 structural maintenance of chromosomes
           (SMC) family protein very strong similarity to SMC-like
           protein (MIM) [Arabidopsis thaliana] GI:5880614;
           contains Pfam profile PF02463: RecF/RecN/SMC N terminal
           domain
          Length = 1057

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 310 KTSESKPSSFGESVSAPVKITPERMAQEIYDEIKRLHRRGQ 432
           K SE  P S  ES+      TPE+++ +I    +RLHR  Q
Sbjct: 827 KASEICPESEIESLGPWDGSTPEQLSAQITRMNQRLHRENQ 867


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 280 AASPSTSPGLKTSESKPSSFGESVSAPVKITPE 378
           A SPS SP    S S  SS  +S + P  +TP+
Sbjct: 266 AHSPSHSPATPKSPSPSSSPAQSPATPSPMTPQ 298


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,844,574
Number of Sequences: 28952
Number of extensions: 219850
Number of successful extensions: 651
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)