BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0996 (477 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical pr... 27 9.2 AF125442-4|AAD12794.1| 317|Caenorhabditis elegans Serpentine re... 27 9.2 AF047658-3|ABC71828.1| 315|Caenorhabditis elegans Hypothetical ... 27 9.2 >Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical protein F40F8.9 protein. Length = 125 Score = 26.6 bits (56), Expect = 9.2 Identities = 15/54 (27%), Positives = 28/54 (51%) Frame = +1 Query: 13 VAFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFC 174 ++ L++K+L + +R G +GF+ + F++ I ERT+ YFC Sbjct: 12 ISLFEQLDKKLL--VVLRDGRKLIGFLRSIDQFANLILEDVVERTF--VEKYFC 61 >AF125442-4|AAD12794.1| 317|Caenorhabditis elegans Serpentine receptor, class v protein21 protein. Length = 317 Score = 26.6 bits (56), Expect = 9.2 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +1 Query: 256 FNLGILFFLCLTSLGVYIVIIA 321 +N I +FLC+ L VYI+I+A Sbjct: 21 WNYLIYYFLCIAILPVYILIVA 42 >AF047658-3|ABC71828.1| 315|Caenorhabditis elegans Hypothetical protein K03H6.4 protein. Length = 315 Score = 26.6 bits (56), Expect = 9.2 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 5/40 (12%) Frame = +1 Query: 229 IPYIYNLIC-----FNLGILFFLCLTSLGVYIVIIAGWSS 333 +P I+NL+ + L F C +S+ ++ V++ W+S Sbjct: 24 VPLIFNLLSQKRFRYRKDFLLFACASSIDMFYVVVTIWNS 63 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,786,911 Number of Sequences: 27780 Number of extensions: 86799 Number of successful extensions: 199 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 198 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 199 length of database: 12,740,198 effective HSP length: 76 effective length of database: 10,628,918 effective search space used: 871571276 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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