Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0996
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF125442-4|AAD12794.1|  317|Caenorhabditis elegans Serpentine re...    27   9.2  
AF047658-3|ABC71828.1|  315|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical
           protein F40F8.9 protein.
          Length = 125

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +1

Query: 13  VAFLTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFC 174
           ++    L++K+L  + +R G   +GF+  +  F++ I     ERT+     YFC
Sbjct: 12  ISLFEQLDKKLL--VVLRDGRKLIGFLRSIDQFANLILEDVVERTF--VEKYFC 61


>AF125442-4|AAD12794.1|  317|Caenorhabditis elegans Serpentine
           receptor, class v protein21 protein.
          Length = 317

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 256 FNLGILFFLCLTSLGVYIVIIA 321
           +N  I +FLC+  L VYI+I+A
Sbjct: 21  WNYLIYYFLCIAILPVYILIVA 42


>AF047658-3|ABC71828.1|  315|Caenorhabditis elegans Hypothetical
           protein K03H6.4 protein.
          Length = 315

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = +1

Query: 229 IPYIYNLIC-----FNLGILFFLCLTSLGVYIVIIAGWSS 333
           +P I+NL+      +    L F C +S+ ++ V++  W+S
Sbjct: 24  VPLIFNLLSQKRFRYRKDFLLFACASSIDMFYVVVTIWNS 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,786,911
Number of Sequences: 27780
Number of extensions: 86799
Number of successful extensions: 199
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)