Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0995
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   153   2e-39
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   153   2e-39
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   2.9  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   8.9  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  153 bits (370), Expect = 2e-39
 Identities = 69/85 (81%), Positives = 78/85 (91%)
 Frame = +1

Query: 163 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 342
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 343 VRIPKEQGLLSFWRGNFANVIRYLP 417
           VRIPKEQG LS+WRGN ANVIRY P
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFP 85



 Score = 84.6 bits (200), Expect = 6e-19
 Identities = 40/54 (74%), Positives = 40/54 (74%)
 Frame = +2

Query: 422 QALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFAR 583
           QALNFAFKDKYKQVFLGGVDK TQF RYF            TSLCFVYPLDFAR
Sbjct: 87  QALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFAR 140



 Score = 27.5 bits (58), Expect = 0.10
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 250 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 408
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  153 bits (370), Expect = 2e-39
 Identities = 69/85 (81%), Positives = 78/85 (91%)
 Frame = +1

Query: 163 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 342
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 343 VRIPKEQGLLSFWRGNFANVIRYLP 417
           VRIPKEQG LS+WRGN ANVIRY P
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFP 85



 Score = 84.6 bits (200), Expect = 6e-19
 Identities = 40/54 (74%), Positives = 40/54 (74%)
 Frame = +2

Query: 422 QALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFAR 583
           QALNFAFKDKYKQVFLGGVDK TQF RYF            TSLCFVYPLDFAR
Sbjct: 87  QALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFAR 140



 Score = 27.5 bits (58), Expect = 0.10
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 250 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 408
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = -3

Query: 497 RTASSCQR---RRGTPACTCP*RRS*APGSGKYLMTLAKLPRQNERRPCS 357
           R+   CQ    R  + +  CP  +   PG  K+   + K P +   RPC+
Sbjct: 73  RSCMCCQESGEREASVSLFCPRAK---PGEKKFRKVITKAPLECMCRPCT 119


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 88  VIPHPRVPQLPPRHIHLVKIT 150
           +I  P   +LPP H H   +T
Sbjct: 92  IITIPPTRKLPPLHPHTAMVT 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,403
Number of Sequences: 438
Number of extensions: 2850
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)