Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0994
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    25   0.71 
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    25   0.71 
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   6.7  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   6.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.8  

>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +1

Query: 403 YHQTLL*FLTLNSYVLNNVY*LKNIRALKFLQDSS*KKPLMPTNLNRIIYFV 558
           Y   LL FLT    +L     L  ++ L  + ++   KPL P  +   +Y V
Sbjct: 76  YCSVLLVFLTYFFNILFRKKLLNAVKILSKIDETLNSKPLKPVKIRTKVYLV 127


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +1

Query: 403 YHQTLL*FLTLNSYVLNNVY*LKNIRALKFLQDSS*KKPLMPTNLNRIIYFV 558
           Y   LL FLT    +L     L  ++ L  + ++   KPL P  +   +Y V
Sbjct: 72  YCSVLLVFLTYFFNILFRKKLLNAVKILSKIDETLNSKPLKPVKIRTKVYLV 123


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 294 VIKGWDQGLAKMSVG 338
           V K WD GL K  VG
Sbjct: 268 VAKLWDSGLRKPGVG 282


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 295 TSPLPNVNLKGCPLSRDESNFF 230
           T+P P  + +GC  S  E +F+
Sbjct: 36  TTPPPEEDNRGCAASVGEGSFY 57


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 621 ILCTYYFITCIF 586
           +LC YYF+  +F
Sbjct: 130 LLCIYYFVVPLF 141


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 348 KLTCSPDFAYGSRGHPGVIPPNAT 419
           K   SPD   G   H G  P +AT
Sbjct: 302 KTNSSPDLWNGKLKHGGPTPSDAT 325


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,060
Number of Sequences: 336
Number of extensions: 3622
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)