Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0994
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...   161   8e-41
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    96   4e-21
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    78   1e-15
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   5.4  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score =  161 bits (391), Expect = 8e-41
 Identities = 68/107 (63%), Positives = 86/107 (80%)
 Frame = +3

Query: 129 MGVDVETISPGNGSTYPKPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGW 308
           MGV+ + IS GNG  +PKPG  + +HYTGTL NGKKFDSS DRG PF  T+G G +I+GW
Sbjct: 1   MGVEKQVISSGNGQDFPKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGW 60

Query: 309 DQGLAKMSVGERAKLTCSPDFAYGSRGHPGVIPPNATLIFDVELLRV 449
           D+G+ KMS+GE+AKLT +PD+ YG RG PG+IPPN+TL+FDVELL +
Sbjct: 61  DEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELLAI 107


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 95.9 bits (228), Expect = 4e-21
 Identities = 48/106 (45%), Positives = 70/106 (66%)
 Frame = +3

Query: 132 GVDVETISPGNGSTYPKPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWD 311
           GV V  +  G+G++    G+ V + Y G L+NGK FD +  +G+PF F LG+G+VI+GWD
Sbjct: 258 GVVVTDVKTGSGASATN-GKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWD 315

Query: 312 QGLAKMSVGERAKLTCSPDFAYGSRGHPGVIPPNATLIFDVELLRV 449
            G+A M  G   K+T     AYG++  PG IP N+TL+F+V+L+RV
Sbjct: 316 VGVAGMQEGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 77.8 bits (183), Expect = 1e-15
 Identities = 46/105 (43%), Positives = 59/105 (56%)
 Frame = +3

Query: 135 VDVETISPGNGSTYPKPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWDQ 314
           V V+    G+G    K  + V + Y G L NGK FD +   G+PF F LG  +VIKGWD 
Sbjct: 260 VTVQDKVKGDGPA-AKRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDV 317

Query: 315 GLAKMSVGERAKLTCSPDFAYGSRGHPGVIPPNATLIFDVELLRV 449
           G+  M VG    +      AYGS+  PG IP N+ L+FDV+LL V
Sbjct: 318 GIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKLLAV 361


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
 Frame = +3

Query: 3    NCHSFATYYY---WVPTYLITFSHKELLTRSCNSSIITLF*-HYKTMGVDVETISPGNGS 170
            NC  FAT ++   + P+    F+H           ++ +F  +Y T+G+ + TISP  G+
Sbjct: 1178 NC-CFATLFFFGWYYPSGFYEFNHNIPFYGGFAWLMLMIFTLYYTTLGIGIATISPSIGT 1236

Query: 171  TYPKPGQTVVV--HYTGTLQ 224
                 G   V   ++ G +Q
Sbjct: 1237 ASIISGTAFVFIQYFNGMIQ 1256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,971
Number of Sequences: 5004
Number of extensions: 56753
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)