BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0994 (650 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase... 161 8e-41 SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 96 4e-21 SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 78 1e-15 SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 26 5.4 >SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase Fkh1|Schizosaccharomyces pombe|chr 2|||Manual Length = 112 Score = 161 bits (391), Expect = 8e-41 Identities = 68/107 (63%), Positives = 86/107 (80%) Frame = +3 Query: 129 MGVDVETISPGNGSTYPKPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGW 308 MGV+ + IS GNG +PKPG + +HYTGTL NGKKFDSS DRG PF T+G G +I+GW Sbjct: 1 MGVEKQVISSGNGQDFPKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGW 60 Query: 309 DQGLAKMSVGERAKLTCSPDFAYGSRGHPGVIPPNATLIFDVELLRV 449 D+G+ KMS+GE+AKLT +PD+ YG RG PG+IPPN+TL+FDVELL + Sbjct: 61 DEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELLAI 107 >SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomerase|Schizosaccharomyces pombe|chr 2|||Manual Length = 361 Score = 95.9 bits (228), Expect = 4e-21 Identities = 48/106 (45%), Positives = 70/106 (66%) Frame = +3 Query: 132 GVDVETISPGNGSTYPKPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWD 311 GV V + G+G++ G+ V + Y G L+NGK FD + +G+PF F LG+G+VI+GWD Sbjct: 258 GVVVTDVKTGSGASATN-GKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWD 315 Query: 312 QGLAKMSVGERAKLTCSPDFAYGSRGHPGVIPPNATLIFDVELLRV 449 G+A M G K+T AYG++ PG IP N+TL+F+V+L+RV Sbjct: 316 VGVAGMQEGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEVKLVRV 360 >SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |Schizosaccharomyces pombe|chr 1|||Manual Length = 362 Score = 77.8 bits (183), Expect = 1e-15 Identities = 46/105 (43%), Positives = 59/105 (56%) Frame = +3 Query: 135 VDVETISPGNGSTYPKPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWDQ 314 V V+ G+G K + V + Y G L NGK FD + G+PF F LG +VIKGWD Sbjct: 260 VTVQDKVKGDGPA-AKRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDV 317 Query: 315 GLAKMSVGERAKLTCSPDFAYGSRGHPGVIPPNATLIFDVELLRV 449 G+ M VG + AYGS+ PG IP N+ L+FDV+LL V Sbjct: 318 GIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKLLAV 361 >SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1396 Score = 25.8 bits (54), Expect = 5.4 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 6/80 (7%) Frame = +3 Query: 3 NCHSFATYYY---WVPTYLITFSHKELLTRSCNSSIITLF*-HYKTMGVDVETISPGNGS 170 NC FAT ++ + P+ F+H ++ +F +Y T+G+ + TISP G+ Sbjct: 1178 NC-CFATLFFFGWYYPSGFYEFNHNIPFYGGFAWLMLMIFTLYYTTLGIGIATISPSIGT 1236 Query: 171 TYPKPGQTVVV--HYTGTLQ 224 G V ++ G +Q Sbjct: 1237 ASIISGTAFVFIQYFNGMIQ 1256 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,714,971 Number of Sequences: 5004 Number of extensions: 56753 Number of successful extensions: 119 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 113 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 115 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 293780908 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -