Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0994
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)                      116   2e-26
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   2e-18
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)                39   0.004
SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09)                 38   0.005
SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0)                      30   1.9  
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_27526| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-08)                 29   3.3  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  
SB_59428| Best HMM Match : Ank (HMM E-Value=2.2)                       28   7.6  

>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
          Length = 266

 Score =  116 bits (278), Expect = 2e-26
 Identities = 52/89 (58%), Positives = 63/89 (70%)
 Frame = +3

Query: 186 GQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWDQGLAKMSVGERAKLTCSP 365
           G T+ +HYTG L NG KFDSS DRG+ F FTLGKG VI+GW+QGL  M +GE+ KLT  P
Sbjct: 45  GDTLSMHYTGRLANGNKFDSSLDRGKTFDFTLGKGMVIQGWEQGLLDMCIGEKRKLTIPP 104

Query: 366 DFAYGSRGHPGVIPPNATLIFDVELLRVE 452
             AYG  G    IPP+ATL  DVEL+ ++
Sbjct: 105 HLAYGENGAGAAIPPHATLYMDVELVEIQ 133


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 49/109 (44%), Positives = 68/109 (62%), Gaps = 7/109 (6%)
 Frame = +3

Query: 144 ETISPGNGSTYPKPGQTVVVHYTGTLQNGKKFDSSRD--RG-QPFKFTLGKGDVIKGWDQ 314
           ET  P +     K G  VVVHYTG +Q+G  FD++RD  +G QPF+FT+G G VIKG++Q
Sbjct: 104 ETFVPSDCENKTKVGDHVVVHYTGWMQDGSLFDTTRDHRKGYQPFEFTIGGGTVIKGFEQ 163

Query: 315 GLAKMSVGERAKLTCSPDFAYGSRGH---PGVIP-PNATLIFDVELLRV 449
           G+  M VG++ K+   P  AYG +G    PG +   N TL +++EL  V
Sbjct: 164 GVTGMCVGQKRKIVIPPALAYGKKGSGDVPGNLDLTNTTLTYNLELFDV 212


>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 24/55 (43%), Positives = 32/55 (58%)
 Frame = +3

Query: 123  KTMGVDVETISPGNGSTYPKPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGK 287
            K  GV    +S G+G+     G TVVV Y G   NG++FDS+   G PF+F LG+
Sbjct: 870  KDGGVRKRILSEGHGAEMANVGCTVVVRYVGKFLNGEEFDSNTG-GVPFEFVLGE 923


>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
          Length = 639

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 23/44 (52%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +3

Query: 186 GQTVVVHYTG-TLQNG---KKFDSSRDRGQPFKFTLGKGDVIKG 305
           G  V V YTG  L+NG   K FDS+    + FKF  GKG VIKG
Sbjct: 122 GDAVEVKYTGWLLENGNFGKVFDSNAGTDKTFKFKTGKGKVIKG 165


>SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09)
          Length = 372

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +3

Query: 189 QTVVVHY-TGTLQNGKK--FDSSRDRGQPFKFTLGKGDVIKGWDQGLAKMSVGERAKLTC 359
           Q  V H+ T  ++  +K   D SR  GQPF+  +GK   ++ W++ +  M V E A+ TC
Sbjct: 93  QLAVFHFKTFLMEQSEKQELDCSRKIGQPFELLMGKKFKLEIWEELIKTMRVKEVARFTC 152

Query: 360 SPDFAYG 380
                 G
Sbjct: 153 DKSVVAG 159


>SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 945

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 131 GSRRGNYFTWKWINLPKTGPNCSRSLHWN 217
           GS++  +FT  W N PK  PN   SL W+
Sbjct: 162 GSQKDRFFTKPWRNRPKVIPNAGNSL-WS 189


>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1283

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
 Frame = -2

Query: 427 KIRVAFGGITPGWPLE---P*AKSGEHVNFALSPTDIFANP*SHPFMTSPLPNV 275
           ++ V   GI PGWP+    P      H+N           P SHP   +P P V
Sbjct: 163 ELDVKVRGIDPGWPINAPAPPPSPSIHINPKFLMKTENLGPASHPIQVAPTPVV 216


>SB_27526| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-08)
          Length = 326

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 339 ERAKLTCSPDFAYGSRGHPGVIPPNATLIFDVELLRVE*CL 461
           +R K        Y + G   V+PP + L   VEL R E CL
Sbjct: 257 KRVKFAKDASSRYAADGPAAVVPPQSGLPLSVELSRSEECL 297


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +3

Query: 234  KFDSSRDRGQPFKFTLGKG----DVIKGWDQGLAKMSVGERAKLT 356
            KFD +   G PFK  +G G    + +K +  GL+    G+ A+ T
Sbjct: 3054 KFDETHIPGSPFKIRVGGGGAHPEKVKAYGPGLSSGHAGKSAEFT 3098


>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1324

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 180 KPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKG--WDQGLAKM 329
           KPG  V +  T  + NGKK+   R      +  LG G+   G  W +G+ ++
Sbjct: 138 KPGDLVFITATYYVNNGKKWKKQRHDMVHVEVWLGDGEKTIGARWQKGVVQV 189


>SB_59428| Best HMM Match : Ank (HMM E-Value=2.2)
          Length = 351

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 517 VFFMK--NLVKTLRPECFSINKHYSTRKSSTSKIRVAFGGITPGWPLEP 377
           +FF +  N +++ RP  FS  K  ++ K   S + +    + P WP  P
Sbjct: 217 LFFWRPDNPLQSPRPSLFSFQKILASSKMKKSSVAILDCMVNPHWPFLP 265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,293,251
Number of Sequences: 59808
Number of extensions: 385020
Number of successful extensions: 678
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)