BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0994 (650 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U27353-1|AAA68610.1| 108|Caenorhabditis elegans rotamase protein. 149 1e-36 AL034393-20|CAA22330.1| 108|Caenorhabditis elegans Hypothetical... 149 1e-36 Z92832-2|CAB07371.1| 431|Caenorhabditis elegans Hypothetical pr... 120 1e-27 Z68760-1|CAA92994.1| 139|Caenorhabditis elegans Hypothetical pr... 111 3e-25 AL034393-19|CAA22328.1| 290|Caenorhabditis elegans Hypothetical... 103 8e-23 AF016430-1|AAB65370.1| 261|Caenorhabditis elegans Fk506-binding... 76 2e-14 U80445-9|AAB37799.1| 264|Caenorhabditis elegans Fk506-binding p... 66 2e-11 U80445-8|AAK68259.1| 300|Caenorhabditis elegans Fk506-binding p... 66 2e-11 Z75554-8|CAA99959.2| 259|Caenorhabditis elegans Hypothetical pr... 58 5e-09 Z81565-3|CAH60773.1| 489|Caenorhabditis elegans Hypothetical pr... 29 2.9 Z81565-2|CAB04581.1| 507|Caenorhabditis elegans Hypothetical pr... 29 2.9 Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 29 2.9 Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 29 2.9 D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 29 2.9 AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 29 2.9 AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 29 2.9 AL031632-3|CAA21006.1| 283|Caenorhabditis elegans Hypothetical ... 29 3.8 U23147-4|AAC46689.1| 464|Caenorhabditis elegans Hypothetical pr... 28 6.6 >U27353-1|AAA68610.1| 108|Caenorhabditis elegans rotamase protein. Length = 108 Score = 149 bits (362), Expect = 1e-36 Identities = 70/107 (65%), Positives = 82/107 (76%) Frame = +3 Query: 129 MGVDVETISPGNGSTYPKPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGW 308 MGVD + + G+ T PK GQTV HY TL+NGKK DSSRDRG PFKF +GKG+VIKGW Sbjct: 1 MGVDRQILVEGDNVTKPKNGQTVTCHYVLTLENGKKIDSSRDRGTPFKFKIGKGEVIKGW 60 Query: 309 DQGLAKMSVGERAKLTCSPDFAYGSRGHPGVIPPNATLIFDVELLRV 449 DQG+A+MSVGE++KLT S D YG RG P IP NATL+F+VELL V Sbjct: 61 DQGVAQMSVGEKSKLTISADLGYGPRGVPPQIPANATLVFEVELLGV 107 >AL034393-20|CAA22330.1| 108|Caenorhabditis elegans Hypothetical protein Y18D10A.19 protein. Length = 108 Score = 149 bits (362), Expect = 1e-36 Identities = 70/107 (65%), Positives = 82/107 (76%) Frame = +3 Query: 129 MGVDVETISPGNGSTYPKPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGW 308 MGVD + + G+ T PK GQTV HY TL+NGKK DSSRDRG PFKF +GKG+VIKGW Sbjct: 1 MGVDRQILVEGDNVTKPKNGQTVTCHYVLTLENGKKIDSSRDRGTPFKFKIGKGEVIKGW 60 Query: 309 DQGLAKMSVGERAKLTCSPDFAYGSRGHPGVIPPNATLIFDVELLRV 449 DQG+A+MSVGE++KLT S D YG RG P IP NATL+F+VELL V Sbjct: 61 DQGVAQMSVGEKSKLTISADLGYGPRGVPPQIPANATLVFEVELLGV 107 >Z92832-2|CAB07371.1| 431|Caenorhabditis elegans Hypothetical protein F31D4.3 protein. Length = 431 Score = 120 bits (288), Expect = 1e-27 Identities = 56/94 (59%), Positives = 64/94 (68%) Frame = +3 Query: 159 GNGSTYPKPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWDQGLAKMSVG 338 G G P G TV VHY GTL+NG KFDSSRDRG F F LG+G+VIKGWD G+A M+ G Sbjct: 24 GQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKG 83 Query: 339 ERAKLTCSPDFAYGSRGHPGVIPPNATLIFDVEL 440 E A+ T D+ YG G P IP ATLIF+VEL Sbjct: 84 EVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVEL 117 >Z68760-1|CAA92994.1| 139|Caenorhabditis elegans Hypothetical protein F36H1.1 protein. Length = 139 Score = 111 bits (268), Expect = 3e-25 Identities = 51/91 (56%), Positives = 64/91 (70%) Frame = +3 Query: 180 KPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWDQGLAKMSVGERAKLTC 359 + G + +HYTGTL +G +FDSSR R + F FTLG+G+VIKGWDQGL M VGER LT Sbjct: 43 RKGDQLHMHYTGTLLDGTEFDSSRTRNEEFTFTLGQGNVIKGWDQGLLNMCVGERRILTI 102 Query: 360 SPDFAYGSRGHPGVIPPNATLIFDVELLRVE 452 P YG RG P IP N+ L FDVEL++++ Sbjct: 103 PPHLGYGERGAPPKIPGNSVLKFDVELMKID 133 >AL034393-19|CAA22328.1| 290|Caenorhabditis elegans Hypothetical protein Y18D10A.25 protein. Length = 290 Score = 103 bits (248), Expect = 8e-23 Identities = 50/96 (52%), Positives = 63/96 (65%) Frame = +3 Query: 120 YKTMGVDVETISPGNGSTYPKPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVI 299 Y +GVD + + G+ T K GQTV HY L +G K DSSRDR PFKF +GKG+VI Sbjct: 194 YAKIGVDRQILVQGDNVTKSKNGQTVTCHYVLILVDGTKIDSSRDRETPFKFKIGKGEVI 253 Query: 300 KGWDQGLAKMSVGERAKLTCSPDFAYGSRGHPGVIP 407 KGWDQG+A+MSV E++KLT +P F + P IP Sbjct: 254 KGWDQGVAQMSVKEKSKLTIAPAFGFEKGKLPAGIP 289 Score = 57.6 bits (133), Expect = 7e-09 Identities = 37/103 (35%), Positives = 50/103 (48%) Frame = +3 Query: 132 GVDVETISPGNGSTYPKPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWD 311 G+ + GNG P+ GQ V + L + S+ + P F +G G+VI G D Sbjct: 85 GIHHQVDKAGNG-VMPENGQLVQCYIEIKLADCYTSWSNYESQNPIIFKIGFGEVIPGLD 143 Query: 312 QGLAKMSVGERAKLTCSPDFAYGSRGHPGVIPPNATLIFDVEL 440 G+ KM VGE A S + YG G G+IP NA+L V L Sbjct: 144 IGIPKMKVGEIATFHVSGKYGYGRAGFRGLIPRNASLTCKVRL 186 >AF016430-1|AAB65370.1| 261|Caenorhabditis elegans Fk506-binding protein family protein3 protein. Length = 261 Score = 76.2 bits (179), Expect = 2e-14 Identities = 41/104 (39%), Positives = 54/104 (51%), Gaps = 1/104 (0%) Frame = +3 Query: 132 GVDVETISPGNGSTYP-KPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGW 308 GV + G T + G T+ YT L++G DSS R +PF F +G G VIKG Sbjct: 147 GVHIHITHEVEGCTEKAQAGDTLHQQYTLNLEDGSFIDSSWSRNRPFIFKMGSGQVIKGM 206 Query: 309 DQGLAKMSVGERAKLTCSPDFAYGSRGHPGVIPPNATLIFDVEL 440 D + M GE+ K+ P+ AYG G P IP N+ L FD+ L Sbjct: 207 DIAMEGMCQGEKRKVVIPPELAYGENGRPPAIPGNSYLHFDLSL 250 Score = 41.5 bits (93), Expect = 5e-04 Identities = 23/60 (38%), Positives = 33/60 (55%) Frame = +3 Query: 261 QPFKFTLGKGDVIKGWDQGLAKMSVGERAKLTCSPDFAYGSRGHPGVIPPNATLIFDVEL 440 +P+ FTLGKG+VI G + + M VGE+ K+ P+ + G V TL + VEL Sbjct: 72 KPYTFTLGKGEVIHGMEIAMEGMCVGEQRKVIIPPEQGFDEDGDE-VEGKGETLYYFVEL 130 >U80445-9|AAB37799.1| 264|Caenorhabditis elegans Fk506-binding protein family protein5, isoform a protein. Length = 264 Score = 66.1 bits (154), Expect = 2e-11 Identities = 35/87 (40%), Positives = 43/87 (49%) Frame = +3 Query: 180 KPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWDQGLAKMSVGERAKLTC 359 K G T+ Y L++G DSS R PF F L +VIKG D + M GER ++ Sbjct: 169 KSGDTIHQQYVLHLEDGTFVDSSFSRNAPFIFKLNNNEVIKGMDIAMTGMCEGERRQVVI 228 Query: 360 SPDFAYGSRGHPGVIPPNATLIFDVEL 440 DF YG G IP A L FD+ L Sbjct: 229 PSDFGYGDDGRAPAIPGKARLYFDITL 255 Score = 48.8 bits (111), Expect = 3e-06 Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Frame = +3 Query: 132 GVDVETISPGNGSTYP---KPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIK 302 G++++ I P P + G + Y + ++GK+ S+ ++ +P+ FTLGKG VI Sbjct: 29 GLEIKIIRPIKAEKCPIKSQDGDVLDQWYKLSDKDGKEIGSNFNK-KPYTFTLGKGQVIP 87 Query: 303 GWDQGLAKMSVGERAKLTCSPDFAYGSRGHP-GVIPPNATLIFDVELL 443 G ++ + M GE+ K+ + +G +G I + TL + V+L+ Sbjct: 88 GMERAMTGMCKGEKRKVVIPGNLGFGDKGRERDNIKEDQTLYYTVQLV 135 >U80445-8|AAK68259.1| 300|Caenorhabditis elegans Fk506-binding protein family protein5, isoform b protein. Length = 300 Score = 66.1 bits (154), Expect = 2e-11 Identities = 35/87 (40%), Positives = 43/87 (49%) Frame = +3 Query: 180 KPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWDQGLAKMSVGERAKLTC 359 K G T+ Y L++G DSS R PF F L +VIKG D + M GER ++ Sbjct: 205 KSGDTIHQQYVLHLEDGTFVDSSFSRNAPFIFKLNNNEVIKGMDIAMTGMCEGERRQVVI 264 Query: 360 SPDFAYGSRGHPGVIPPNATLIFDVEL 440 DF YG G IP A L FD+ L Sbjct: 265 PSDFGYGDDGRAPAIPGKARLYFDITL 291 Score = 48.8 bits (111), Expect = 3e-06 Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 4/108 (3%) Frame = +3 Query: 132 GVDVETISPGNGSTYP---KPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIK 302 G++++ I P P + G + Y + ++GK+ S+ ++ +P+ FTLGKG VI Sbjct: 65 GLEIKIIRPIKAEKCPIKSQDGDVLDQWYKLSDKDGKEIGSNFNK-KPYTFTLGKGQVIP 123 Query: 303 GWDQGLAKMSVGERAKLTCSPDFAYGSRGHP-GVIPPNATLIFDVELL 443 G ++ + M GE+ K+ + +G +G I + TL + V+L+ Sbjct: 124 GMERAMTGMCKGEKRKVVIPGNLGFGDKGRERDNIKEDQTLYYTVQLV 171 >Z75554-8|CAA99959.2| 259|Caenorhabditis elegans Hypothetical protein ZC455.10 protein. Length = 259 Score = 58.0 bits (134), Expect = 5e-09 Identities = 30/85 (35%), Positives = 42/85 (49%) Frame = +3 Query: 186 GQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWDQGLAKMSVGERAKLTCSP 365 G + Y L++ DSS R PF F L +VI G D + M GER ++ Sbjct: 166 GDKIYQQYVLRLEDNTLVDSSYSRNAPFVFRLRNREVIDGMDIAMDGMCEGERRRVVIPS 225 Query: 366 DFAYGSRGHPGVIPPNATLIFDVEL 440 ++ YGS+G P IP A L F++ L Sbjct: 226 EYGYGSQGSPPEIPGGARLFFEIVL 250 Score = 41.5 bits (93), Expect = 5e-04 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Frame = +3 Query: 186 GQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWDQGLAKMSVGERAKLTCSP 365 G V +Y T + G + S+ + +P+ FTLG+ VI G D+ + M +GE K+ P Sbjct: 52 GDVVDQYYKLTDEKGVEIGSNFGK-KPYTFTLGRNQVIPGMDRAMRGMCIGEIRKVVIPP 110 Query: 366 --DFAYGSRGHP 395 FA S G P Sbjct: 111 KLGFAKDSTGQP 122 >Z81565-3|CAH60773.1| 489|Caenorhabditis elegans Hypothetical protein K06G5.1b protein. Length = 489 Score = 29.1 bits (62), Expect = 2.9 Identities = 20/66 (30%), Positives = 29/66 (43%) Frame = +3 Query: 216 TLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWDQGLAKMSVGERAKLTCSPDFAYGSRGHP 395 TL NGK D+S + FT+ K + + V SP+ YGS G Sbjct: 88 TLYNGKVADNST---KITTFTVADSGTTKSYTSSTQYIYVEYTQDNATSPNAYYGSIGAG 144 Query: 396 GVIPPN 413 G++PP+ Sbjct: 145 GLLPPS 150 >Z81565-2|CAB04581.1| 507|Caenorhabditis elegans Hypothetical protein K06G5.1a protein. Length = 507 Score = 29.1 bits (62), Expect = 2.9 Identities = 20/66 (30%), Positives = 29/66 (43%) Frame = +3 Query: 216 TLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWDQGLAKMSVGERAKLTCSPDFAYGSRGHP 395 TL NGK D+S + FT+ K + + V SP+ YGS G Sbjct: 88 TLYNGKVADNST---KITTFTVADSGTTKSYTSSTQYIYVEYTQDNATSPNAYYGSIGAG 144 Query: 396 GVIPPN 413 G++PP+ Sbjct: 145 GLLPPS 150 >Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein K08C7.3b protein. Length = 3672 Score = 29.1 bits (62), Expect = 2.9 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = -2 Query: 370 KSGEHVNFALSPTDIFANP*SHPFMTSPLPNVNLKGCPLSRDES 239 KSGE +F D+ N F S + ++L GC LS DE+ Sbjct: 3199 KSGETPSFVGCIGDVTLNGKLLDFANSEIKEISLNGCSLSDDEN 3242 >Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein K08C7.3a protein. Length = 3704 Score = 29.1 bits (62), Expect = 2.9 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = -2 Query: 370 KSGEHVNFALSPTDIFANP*SHPFMTSPLPNVNLKGCPLSRDES 239 KSGE +F D+ N F S + ++L GC LS DE+ Sbjct: 3199 KSGETPSFVGCIGDVTLNGKLLDFANSEIKEISLNGCSLSDDEN 3242 >D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. Length = 1518 Score = 29.1 bits (62), Expect = 2.9 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = -2 Query: 370 KSGEHVNFALSPTDIFANP*SHPFMTSPLPNVNLKGCPLSRDES 239 KSGE +F D+ N F S + ++L GC LS DE+ Sbjct: 1013 KSGETPSFVGCIGDVTLNGKLLDFANSEIKEISLNGCSLSDDEN 1056 >AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha chain protein. Length = 3704 Score = 29.1 bits (62), Expect = 2.9 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = -2 Query: 370 KSGEHVNFALSPTDIFANP*SHPFMTSPLPNVNLKGCPLSRDES 239 KSGE +F D+ N F S + ++L GC LS DE+ Sbjct: 3199 KSGETPSFVGCIGDVTLNGKLLDFANSEIKEISLNGCSLSDDEN 3242 >AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha protein. Length = 3704 Score = 29.1 bits (62), Expect = 2.9 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = -2 Query: 370 KSGEHVNFALSPTDIFANP*SHPFMTSPLPNVNLKGCPLSRDES 239 KSGE +F D+ N F S + ++L GC LS DE+ Sbjct: 3199 KSGETPSFVGCIGDVTLNGKLLDFANSEIKEISLNGCSLSDDEN 3242 >AL031632-3|CAA21006.1| 283|Caenorhabditis elegans Hypothetical protein Y32B12B.3 protein. Length = 283 Score = 28.7 bits (61), Expect = 3.8 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = -2 Query: 520 VVFFMKNLVKTLRPECFSINKHYSTRKSSTSKIRVAFGGITPGWPLEP 377 V+F+ + ++ T P C S NK Y T K+ + WP+ P Sbjct: 43 VLFYSRLIIDTAYPFCASFNKFYYFLHLFTEKLVIRNATFFMLWPIIP 90 >U23147-4|AAC46689.1| 464|Caenorhabditis elegans Hypothetical protein C18H9.5 protein. Length = 464 Score = 27.9 bits (59), Expect = 6.6 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +3 Query: 216 TLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWD 311 T+++GK F+SS+ R Q KFT + K W+ Sbjct: 239 TIRDGKIFESSKHRPQNVKFT----QIFKNWE 266 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,752,485 Number of Sequences: 27780 Number of extensions: 315363 Number of successful extensions: 715 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 684 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 715 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1444744186 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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