Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0994
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U27353-1|AAA68610.1| 108|Caenorhabditis elegans rotamase protein. 149 1e-36
AL034393-20|CAA22330.1| 108|Caenorhabditis elegans Hypothetical... 149 1e-36
Z92832-2|CAB07371.1| 431|Caenorhabditis elegans Hypothetical pr... 120 1e-27
Z68760-1|CAA92994.1| 139|Caenorhabditis elegans Hypothetical pr... 111 3e-25
AL034393-19|CAA22328.1| 290|Caenorhabditis elegans Hypothetical... 103 8e-23
AF016430-1|AAB65370.1| 261|Caenorhabditis elegans Fk506-binding... 76 2e-14
U80445-9|AAB37799.1| 264|Caenorhabditis elegans Fk506-binding p... 66 2e-11
U80445-8|AAK68259.1| 300|Caenorhabditis elegans Fk506-binding p... 66 2e-11
Z75554-8|CAA99959.2| 259|Caenorhabditis elegans Hypothetical pr... 58 5e-09
Z81565-3|CAH60773.1| 489|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81565-2|CAB04581.1| 507|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 29 2.9
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 29 2.9
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 29 2.9
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 29 2.9
AL031632-3|CAA21006.1| 283|Caenorhabditis elegans Hypothetical ... 29 3.8
U23147-4|AAC46689.1| 464|Caenorhabditis elegans Hypothetical pr... 28 6.6
>U27353-1|AAA68610.1| 108|Caenorhabditis elegans rotamase protein.
Length = 108
Score = 149 bits (362), Expect = 1e-36
Identities = 70/107 (65%), Positives = 82/107 (76%)
Frame = +3
Query: 129 MGVDVETISPGNGSTYPKPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGW 308
MGVD + + G+ T PK GQTV HY TL+NGKK DSSRDRG PFKF +GKG+VIKGW
Sbjct: 1 MGVDRQILVEGDNVTKPKNGQTVTCHYVLTLENGKKIDSSRDRGTPFKFKIGKGEVIKGW 60
Query: 309 DQGLAKMSVGERAKLTCSPDFAYGSRGHPGVIPPNATLIFDVELLRV 449
DQG+A+MSVGE++KLT S D YG RG P IP NATL+F+VELL V
Sbjct: 61 DQGVAQMSVGEKSKLTISADLGYGPRGVPPQIPANATLVFEVELLGV 107
>AL034393-20|CAA22330.1| 108|Caenorhabditis elegans Hypothetical
protein Y18D10A.19 protein.
Length = 108
Score = 149 bits (362), Expect = 1e-36
Identities = 70/107 (65%), Positives = 82/107 (76%)
Frame = +3
Query: 129 MGVDVETISPGNGSTYPKPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGW 308
MGVD + + G+ T PK GQTV HY TL+NGKK DSSRDRG PFKF +GKG+VIKGW
Sbjct: 1 MGVDRQILVEGDNVTKPKNGQTVTCHYVLTLENGKKIDSSRDRGTPFKFKIGKGEVIKGW 60
Query: 309 DQGLAKMSVGERAKLTCSPDFAYGSRGHPGVIPPNATLIFDVELLRV 449
DQG+A+MSVGE++KLT S D YG RG P IP NATL+F+VELL V
Sbjct: 61 DQGVAQMSVGEKSKLTISADLGYGPRGVPPQIPANATLVFEVELLGV 107
>Z92832-2|CAB07371.1| 431|Caenorhabditis elegans Hypothetical
protein F31D4.3 protein.
Length = 431
Score = 120 bits (288), Expect = 1e-27
Identities = 56/94 (59%), Positives = 64/94 (68%)
Frame = +3
Query: 159 GNGSTYPKPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWDQGLAKMSVG 338
G G P G TV VHY GTL+NG KFDSSRDRG F F LG+G+VIKGWD G+A M+ G
Sbjct: 24 GQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKG 83
Query: 339 ERAKLTCSPDFAYGSRGHPGVIPPNATLIFDVEL 440
E A+ T D+ YG G P IP ATLIF+VEL
Sbjct: 84 EVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVEL 117
>Z68760-1|CAA92994.1| 139|Caenorhabditis elegans Hypothetical
protein F36H1.1 protein.
Length = 139
Score = 111 bits (268), Expect = 3e-25
Identities = 51/91 (56%), Positives = 64/91 (70%)
Frame = +3
Query: 180 KPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWDQGLAKMSVGERAKLTC 359
+ G + +HYTGTL +G +FDSSR R + F FTLG+G+VIKGWDQGL M VGER LT
Sbjct: 43 RKGDQLHMHYTGTLLDGTEFDSSRTRNEEFTFTLGQGNVIKGWDQGLLNMCVGERRILTI 102
Query: 360 SPDFAYGSRGHPGVIPPNATLIFDVELLRVE 452
P YG RG P IP N+ L FDVEL++++
Sbjct: 103 PPHLGYGERGAPPKIPGNSVLKFDVELMKID 133
>AL034393-19|CAA22328.1| 290|Caenorhabditis elegans Hypothetical
protein Y18D10A.25 protein.
Length = 290
Score = 103 bits (248), Expect = 8e-23
Identities = 50/96 (52%), Positives = 63/96 (65%)
Frame = +3
Query: 120 YKTMGVDVETISPGNGSTYPKPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVI 299
Y +GVD + + G+ T K GQTV HY L +G K DSSRDR PFKF +GKG+VI
Sbjct: 194 YAKIGVDRQILVQGDNVTKSKNGQTVTCHYVLILVDGTKIDSSRDRETPFKFKIGKGEVI 253
Query: 300 KGWDQGLAKMSVGERAKLTCSPDFAYGSRGHPGVIP 407
KGWDQG+A+MSV E++KLT +P F + P IP
Sbjct: 254 KGWDQGVAQMSVKEKSKLTIAPAFGFEKGKLPAGIP 289
Score = 57.6 bits (133), Expect = 7e-09
Identities = 37/103 (35%), Positives = 50/103 (48%)
Frame = +3
Query: 132 GVDVETISPGNGSTYPKPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWD 311
G+ + GNG P+ GQ V + L + S+ + P F +G G+VI G D
Sbjct: 85 GIHHQVDKAGNG-VMPENGQLVQCYIEIKLADCYTSWSNYESQNPIIFKIGFGEVIPGLD 143
Query: 312 QGLAKMSVGERAKLTCSPDFAYGSRGHPGVIPPNATLIFDVEL 440
G+ KM VGE A S + YG G G+IP NA+L V L
Sbjct: 144 IGIPKMKVGEIATFHVSGKYGYGRAGFRGLIPRNASLTCKVRL 186
>AF016430-1|AAB65370.1| 261|Caenorhabditis elegans Fk506-binding
protein family protein3 protein.
Length = 261
Score = 76.2 bits (179), Expect = 2e-14
Identities = 41/104 (39%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Frame = +3
Query: 132 GVDVETISPGNGSTYP-KPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGW 308
GV + G T + G T+ YT L++G DSS R +PF F +G G VIKG
Sbjct: 147 GVHIHITHEVEGCTEKAQAGDTLHQQYTLNLEDGSFIDSSWSRNRPFIFKMGSGQVIKGM 206
Query: 309 DQGLAKMSVGERAKLTCSPDFAYGSRGHPGVIPPNATLIFDVEL 440
D + M GE+ K+ P+ AYG G P IP N+ L FD+ L
Sbjct: 207 DIAMEGMCQGEKRKVVIPPELAYGENGRPPAIPGNSYLHFDLSL 250
Score = 41.5 bits (93), Expect = 5e-04
Identities = 23/60 (38%), Positives = 33/60 (55%)
Frame = +3
Query: 261 QPFKFTLGKGDVIKGWDQGLAKMSVGERAKLTCSPDFAYGSRGHPGVIPPNATLIFDVEL 440
+P+ FTLGKG+VI G + + M VGE+ K+ P+ + G V TL + VEL
Sbjct: 72 KPYTFTLGKGEVIHGMEIAMEGMCVGEQRKVIIPPEQGFDEDGDE-VEGKGETLYYFVEL 130
>U80445-9|AAB37799.1| 264|Caenorhabditis elegans Fk506-binding
protein family protein5, isoform a protein.
Length = 264
Score = 66.1 bits (154), Expect = 2e-11
Identities = 35/87 (40%), Positives = 43/87 (49%)
Frame = +3
Query: 180 KPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWDQGLAKMSVGERAKLTC 359
K G T+ Y L++G DSS R PF F L +VIKG D + M GER ++
Sbjct: 169 KSGDTIHQQYVLHLEDGTFVDSSFSRNAPFIFKLNNNEVIKGMDIAMTGMCEGERRQVVI 228
Query: 360 SPDFAYGSRGHPGVIPPNATLIFDVEL 440
DF YG G IP A L FD+ L
Sbjct: 229 PSDFGYGDDGRAPAIPGKARLYFDITL 255
Score = 48.8 bits (111), Expect = 3e-06
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Frame = +3
Query: 132 GVDVETISPGNGSTYP---KPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIK 302
G++++ I P P + G + Y + ++GK+ S+ ++ +P+ FTLGKG VI
Sbjct: 29 GLEIKIIRPIKAEKCPIKSQDGDVLDQWYKLSDKDGKEIGSNFNK-KPYTFTLGKGQVIP 87
Query: 303 GWDQGLAKMSVGERAKLTCSPDFAYGSRGHP-GVIPPNATLIFDVELL 443
G ++ + M GE+ K+ + +G +G I + TL + V+L+
Sbjct: 88 GMERAMTGMCKGEKRKVVIPGNLGFGDKGRERDNIKEDQTLYYTVQLV 135
>U80445-8|AAK68259.1| 300|Caenorhabditis elegans Fk506-binding
protein family protein5, isoform b protein.
Length = 300
Score = 66.1 bits (154), Expect = 2e-11
Identities = 35/87 (40%), Positives = 43/87 (49%)
Frame = +3
Query: 180 KPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWDQGLAKMSVGERAKLTC 359
K G T+ Y L++G DSS R PF F L +VIKG D + M GER ++
Sbjct: 205 KSGDTIHQQYVLHLEDGTFVDSSFSRNAPFIFKLNNNEVIKGMDIAMTGMCEGERRQVVI 264
Query: 360 SPDFAYGSRGHPGVIPPNATLIFDVEL 440
DF YG G IP A L FD+ L
Sbjct: 265 PSDFGYGDDGRAPAIPGKARLYFDITL 291
Score = 48.8 bits (111), Expect = 3e-06
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Frame = +3
Query: 132 GVDVETISPGNGSTYP---KPGQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIK 302
G++++ I P P + G + Y + ++GK+ S+ ++ +P+ FTLGKG VI
Sbjct: 65 GLEIKIIRPIKAEKCPIKSQDGDVLDQWYKLSDKDGKEIGSNFNK-KPYTFTLGKGQVIP 123
Query: 303 GWDQGLAKMSVGERAKLTCSPDFAYGSRGHP-GVIPPNATLIFDVELL 443
G ++ + M GE+ K+ + +G +G I + TL + V+L+
Sbjct: 124 GMERAMTGMCKGEKRKVVIPGNLGFGDKGRERDNIKEDQTLYYTVQLV 171
>Z75554-8|CAA99959.2| 259|Caenorhabditis elegans Hypothetical
protein ZC455.10 protein.
Length = 259
Score = 58.0 bits (134), Expect = 5e-09
Identities = 30/85 (35%), Positives = 42/85 (49%)
Frame = +3
Query: 186 GQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWDQGLAKMSVGERAKLTCSP 365
G + Y L++ DSS R PF F L +VI G D + M GER ++
Sbjct: 166 GDKIYQQYVLRLEDNTLVDSSYSRNAPFVFRLRNREVIDGMDIAMDGMCEGERRRVVIPS 225
Query: 366 DFAYGSRGHPGVIPPNATLIFDVEL 440
++ YGS+G P IP A L F++ L
Sbjct: 226 EYGYGSQGSPPEIPGGARLFFEIVL 250
Score = 41.5 bits (93), Expect = 5e-04
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +3
Query: 186 GQTVVVHYTGTLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWDQGLAKMSVGERAKLTCSP 365
G V +Y T + G + S+ + +P+ FTLG+ VI G D+ + M +GE K+ P
Sbjct: 52 GDVVDQYYKLTDEKGVEIGSNFGK-KPYTFTLGRNQVIPGMDRAMRGMCIGEIRKVVIPP 110
Query: 366 --DFAYGSRGHP 395
FA S G P
Sbjct: 111 KLGFAKDSTGQP 122
>Z81565-3|CAH60773.1| 489|Caenorhabditis elegans Hypothetical
protein K06G5.1b protein.
Length = 489
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +3
Query: 216 TLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWDQGLAKMSVGERAKLTCSPDFAYGSRGHP 395
TL NGK D+S + FT+ K + + V SP+ YGS G
Sbjct: 88 TLYNGKVADNST---KITTFTVADSGTTKSYTSSTQYIYVEYTQDNATSPNAYYGSIGAG 144
Query: 396 GVIPPN 413
G++PP+
Sbjct: 145 GLLPPS 150
>Z81565-2|CAB04581.1| 507|Caenorhabditis elegans Hypothetical
protein K06G5.1a protein.
Length = 507
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +3
Query: 216 TLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWDQGLAKMSVGERAKLTCSPDFAYGSRGHP 395
TL NGK D+S + FT+ K + + V SP+ YGS G
Sbjct: 88 TLYNGKVADNST---KITTFTVADSGTTKSYTSSTQYIYVEYTQDNATSPNAYYGSIGAG 144
Query: 396 GVIPPN 413
G++PP+
Sbjct: 145 GLLPPS 150
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 370 KSGEHVNFALSPTDIFANP*SHPFMTSPLPNVNLKGCPLSRDES 239
KSGE +F D+ N F S + ++L GC LS DE+
Sbjct: 3199 KSGETPSFVGCIGDVTLNGKLLDFANSEIKEISLNGCSLSDDEN 3242
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 370 KSGEHVNFALSPTDIFANP*SHPFMTSPLPNVNLKGCPLSRDES 239
KSGE +F D+ N F S + ++L GC LS DE+
Sbjct: 3199 KSGETPSFVGCIGDVTLNGKLLDFANSEIKEISLNGCSLSDDEN 3242
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 370 KSGEHVNFALSPTDIFANP*SHPFMTSPLPNVNLKGCPLSRDES 239
KSGE +F D+ N F S + ++L GC LS DE+
Sbjct: 1013 KSGETPSFVGCIGDVTLNGKLLDFANSEIKEISLNGCSLSDDEN 1056
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 370 KSGEHVNFALSPTDIFANP*SHPFMTSPLPNVNLKGCPLSRDES 239
KSGE +F D+ N F S + ++L GC LS DE+
Sbjct: 3199 KSGETPSFVGCIGDVTLNGKLLDFANSEIKEISLNGCSLSDDEN 3242
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 370 KSGEHVNFALSPTDIFANP*SHPFMTSPLPNVNLKGCPLSRDES 239
KSGE +F D+ N F S + ++L GC LS DE+
Sbjct: 3199 KSGETPSFVGCIGDVTLNGKLLDFANSEIKEISLNGCSLSDDEN 3242
>AL031632-3|CAA21006.1| 283|Caenorhabditis elegans Hypothetical
protein Y32B12B.3 protein.
Length = 283
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 520 VVFFMKNLVKTLRPECFSINKHYSTRKSSTSKIRVAFGGITPGWPLEP 377
V+F+ + ++ T P C S NK Y T K+ + WP+ P
Sbjct: 43 VLFYSRLIIDTAYPFCASFNKFYYFLHLFTEKLVIRNATFFMLWPIIP 90
>U23147-4|AAC46689.1| 464|Caenorhabditis elegans Hypothetical
protein C18H9.5 protein.
Length = 464
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 216 TLQNGKKFDSSRDRGQPFKFTLGKGDVIKGWD 311
T+++GK F+SS+ R Q KFT + K W+
Sbjct: 239 TIRDGKIFESSKHRPQNVKFT----QIFKNWE 266
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,752,485
Number of Sequences: 27780
Number of extensions: 315363
Number of successful extensions: 715
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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