Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0993
         (723 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    25   0.47 
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    25   0.47 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   4.4  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   5.8  

>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
 Frame = +2

Query: 635 HPSGAVSLANI---GVKPTKSKPVAEPDPK 715
           HP  A+  A I      PT + P  EPDP+
Sbjct: 12  HPDDAIRRAKIVKVAASPTSANPDEEPDPE 41


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
 Frame = +2

Query: 635 HPSGAVSLANI---GVKPTKSKPVAEPDPK 715
           HP  A+  A I      PT + P  EPDP+
Sbjct: 12  HPDDAIRRAKIVKVAASPTSANPDEEPDPE 41


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 277 SGSRWFLWSRFWNSGTGRSFGCK 209
           SGS +  WS F     G+ +G K
Sbjct: 227 SGSLYTCWSEFTQKTQGQIYGIK 249


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -3

Query: 259 LWSRFWNSGTGRSFGCKSRRCGLRKC*VFNCFDSTFGLRHL 137
           LW +  N GT   F   +    L+K  + +     F L HL
Sbjct: 6   LWKKIRNRGTPPKFELPTTHNCLKKVLLLSQIVGVFPLNHL 46


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,633
Number of Sequences: 336
Number of extensions: 1881
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)