Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0993
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.51 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   4.7  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     26   6.3  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 534  PTVTAPDADPFPTSPPLPTRAAGL 605
            P+V  P   P  T+PP+PT +AGL
Sbjct: 1203 PSVGVPPVPPPSTAPPVPTPSAGL 1226


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 534 PTVTAPDADPFPTSPPLP 587
           PT T   ADP P  PP P
Sbjct: 225 PTYTPKQADPLPAPPPPP 242


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 504 HQIIASELRTPTVTAPDADPFPTSPPLPT 590
           H+  ++ ++ PT T  + +P+P    +PT
Sbjct: 206 HEAPSTAVKAPTATVAENEPYPKPQSVPT 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,887
Number of Sequences: 5004
Number of extensions: 29164
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)