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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0993
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0056 + 15476868-15476896,15477581-15478259                       31   0.70 
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704...    31   0.93 
06_02_0013 - 10581449-10585105                                         29   2.8  
06_01_0374 + 2694546-2694755,2696339-2696932,2697910-2698188           29   2.8  
05_03_0513 + 14919136-14920881                                         29   2.8  
04_03_0178 + 12298502-12298878,12298896-12298998,12299211-122992...    29   2.8  
07_03_1107 - 24024387-24024497,24025799-24026410                       29   3.7  
03_01_0566 - 4184379-4184491,4184616-4184726,4184800-4184889,418...    29   3.7  
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445...    29   4.9  
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527...    29   4.9  
01_07_0058 + 40799547-40799810,40799942-40799978,40800279-408003...    29   4.9  
12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693           28   6.5  
03_03_0052 + 14101886-14102117,14104271-14104422,14104545-141048...    28   6.5  
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89...    28   8.6  
01_01_0921 + 7275019-7275363,7275422-7276147,7276289-7276346,727...    28   8.6  

>01_04_0056 + 15476868-15476896,15477581-15478259
          Length = 235

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 489 AATLAHQIIASELRTPTVTAPDADPFPTSPPLPTRAA 599
           A TL H  + +     T TA  A P P +PP PTR A
Sbjct: 64  APTLPHSHLTNPRHPATPTATAATPKPNTPPDPTRPA 100


>12_02_0118 -
           13869237-13869307,13869375-13869465,13870321-13870440,
           13870668-13870795,13871159-13871270,13871719-13871817,
           13871918-13871992,13872099-13872320,13873177-13874034
          Length = 591

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 513 IASELRTPTVTAPDADPFPTSPPLPTR 593
           + S +R P    P A PFP SPP P++
Sbjct: 52  VPSSIRAPQAPPPGARPFPGSPPPPSQ 78


>06_02_0013 - 10581449-10585105
          Length = 1218

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 281 SSTDSPPLANTPSKEEAPVVPAAKSTEEAAQETRL 385
           SSTD P    TP ++ +P VP   S  E A++ ++
Sbjct: 620 SSTDEPGTVVTPEEKVSPNVPVGHSEIEIAEDNKI 654


>06_01_0374 + 2694546-2694755,2696339-2696932,2697910-2698188
          Length = 360

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 598 PDSPFDEPTVPMPPVGSGL 654
           PD+P+  P VP PP  SGL
Sbjct: 299 PDNPWTVPEVPSPPTASGL 317


>05_03_0513 + 14919136-14920881
          Length = 581

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 275 GDSSTDSPPLANTPSKEEAPVVPAAKSTEEAAQETRL 385
           GDS++  P  A+ P++ EAP +   +  E A Q+ +L
Sbjct: 440 GDSASSKPDTADHPTEAEAPKLQPLEQHEVAEQDKKL 476


>04_03_0178 +
           12298502-12298878,12298896-12298998,12299211-12299271,
           12299423-12299486,12299825-12299996,12300765-12300863
          Length = 291

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 534 PTVTAPDADPFPTSPPLPTRAAGLAVR 614
           P+ T P   P PT  PLP+  AG + R
Sbjct: 2   PSSTPPSVQPAPTVQPLPSSTAGQSTR 28


>07_03_1107 - 24024387-24024497,24025799-24026410
          Length = 240

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 263 PAAAGDSSTDSPPLANTPSKEEAPVVPAAKSTEEA 367
           PA A   +T +PP A+TP    AP  PA  +  EA
Sbjct: 44  PAPAAAPTTTTPPAASTP-PAAAPTTPATPAPAEA 77


>03_01_0566 -
           4184379-4184491,4184616-4184726,4184800-4184889,
           4184996-4185113
          Length = 143

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 353 IWRPERRGLLLWTVCWLREGCRWSYL 276
           +W P  +  LLW VC  REG R  +L
Sbjct: 1   MWGPHVKWRLLWRVCLSREGSRGPHL 26


>06_03_1006 +
           26844161-26844198,26844304-26844372,26844526-26844591,
           26844831-26844902,26844982-26845053,26846179-26846244,
           26846409-26846881,26846966-26847324,26847429-26847697,
           26847780-26847918,26848323-26848462,26848612-26848768,
           26848925-26848978,26849457-26849539,26851085-26851136
          Length = 702

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 531 TPTVTAPDADPFPTSPPLPT 590
           TPT T P   P PT PP P+
Sbjct: 154 TPTPTRPAPSPSPTGPPTPS 173


>04_03_0747 -
           19251617-19251781,19252377-19252502,19252606-19252716,
           19252931-19253679,19254034-19254167,19254595-19254740,
           19255166-19255336,19255977-19256828
          Length = 817

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 528 RTPTVT-APDADPFPTSPPLPTRAAGLAVR 614
           RTP  T  P   P PT PP+P  AA L  R
Sbjct: 137 RTPMPTPTPTPTPTPTRPPVPVWAAPLPAR 166


>01_07_0058 +
           40799547-40799810,40799942-40799978,40800279-40800362,
           40800563-40800615
          Length = 145

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 528 RTPTVTAPDADPFPTSPPLPTRAAGLA 608
           R P  +AP A P P+SPP P   A  A
Sbjct: 25  RRPQPSAPLASPAPSSPPRPRSVAAAA 51


>12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693
          Length = 407

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 531 TPTVTAPDADPFPTSPPLPTRAAGLAVRRAHGTHA 635
           +P   +P + P P + P P +  G A+   HG HA
Sbjct: 333 SPPFPSPPSPPPPPTSPSPRQHRGWAIFAPHGGHA 367


>03_03_0052 +
           14101886-14102117,14104271-14104422,14104545-14104818,
           14104926-14105098
          Length = 276

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 702 SATGLLLVGLTPILASETAPDGWHG 628
           +A GL L  L P L  +TA D WHG
Sbjct: 3   AAVGLGLPFLPPFLRGKTAEDFWHG 27


>04_01_0082 +
           897026-897028,897101-897350,898454-898608,898686-898967,
           899078-899160,899335-899485,899896-899952,900279-900479
          Length = 393

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 166 FDSTFGLRHLGSGWLGSCCNSF 101
           F+S  GL HLG+ W GSC   F
Sbjct: 348 FNSDLGL-HLGNSWSGSCLAKF 368


>01_01_0921 +
           7275019-7275363,7275422-7276147,7276289-7276346,
           7276773-7276972
          Length = 442

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 613 RTASPAARVGRGGEVGKGSASGAVTVGVR 527
           R  SP A V RGGE+ K +  G +TV ++
Sbjct: 333 RDTSPFAFVSRGGELLKRTRQGTITVIIK 361


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,319,118
Number of Sequences: 37544
Number of extensions: 277773
Number of successful extensions: 1774
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1772
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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