Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0993
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0056 + 15476868-15476896,15477581-15478259 31 0.70
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 31 0.93
06_02_0013 - 10581449-10585105 29 2.8
06_01_0374 + 2694546-2694755,2696339-2696932,2697910-2698188 29 2.8
05_03_0513 + 14919136-14920881 29 2.8
04_03_0178 + 12298502-12298878,12298896-12298998,12299211-122992... 29 2.8
07_03_1107 - 24024387-24024497,24025799-24026410 29 3.7
03_01_0566 - 4184379-4184491,4184616-4184726,4184800-4184889,418... 29 3.7
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 29 4.9
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 29 4.9
01_07_0058 + 40799547-40799810,40799942-40799978,40800279-408003... 29 4.9
12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693 28 6.5
03_03_0052 + 14101886-14102117,14104271-14104422,14104545-141048... 28 6.5
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89... 28 8.6
01_01_0921 + 7275019-7275363,7275422-7276147,7276289-7276346,727... 28 8.6
>01_04_0056 + 15476868-15476896,15477581-15478259
Length = 235
Score = 31.5 bits (68), Expect = 0.70
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 489 AATLAHQIIASELRTPTVTAPDADPFPTSPPLPTRAA 599
A TL H + + T TA A P P +PP PTR A
Sbjct: 64 APTLPHSHLTNPRHPATPTATAATPKPNTPPDPTRPA 100
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 31.1 bits (67), Expect = 0.93
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 513 IASELRTPTVTAPDADPFPTSPPLPTR 593
+ S +R P P A PFP SPP P++
Sbjct: 52 VPSSIRAPQAPPPGARPFPGSPPPPSQ 78
>06_02_0013 - 10581449-10585105
Length = 1218
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 281 SSTDSPPLANTPSKEEAPVVPAAKSTEEAAQETRL 385
SSTD P TP ++ +P VP S E A++ ++
Sbjct: 620 SSTDEPGTVVTPEEKVSPNVPVGHSEIEIAEDNKI 654
>06_01_0374 + 2694546-2694755,2696339-2696932,2697910-2698188
Length = 360
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 598 PDSPFDEPTVPMPPVGSGL 654
PD+P+ P VP PP SGL
Sbjct: 299 PDNPWTVPEVPSPPTASGL 317
>05_03_0513 + 14919136-14920881
Length = 581
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 275 GDSSTDSPPLANTPSKEEAPVVPAAKSTEEAAQETRL 385
GDS++ P A+ P++ EAP + + E A Q+ +L
Sbjct: 440 GDSASSKPDTADHPTEAEAPKLQPLEQHEVAEQDKKL 476
>04_03_0178 +
12298502-12298878,12298896-12298998,12299211-12299271,
12299423-12299486,12299825-12299996,12300765-12300863
Length = 291
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 534 PTVTAPDADPFPTSPPLPTRAAGLAVR 614
P+ T P P PT PLP+ AG + R
Sbjct: 2 PSSTPPSVQPAPTVQPLPSSTAGQSTR 28
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 263 PAAAGDSSTDSPPLANTPSKEEAPVVPAAKSTEEA 367
PA A +T +PP A+TP AP PA + EA
Sbjct: 44 PAPAAAPTTTTPPAASTP-PAAAPTTPATPAPAEA 77
>03_01_0566 -
4184379-4184491,4184616-4184726,4184800-4184889,
4184996-4185113
Length = 143
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 353 IWRPERRGLLLWTVCWLREGCRWSYL 276
+W P + LLW VC REG R +L
Sbjct: 1 MWGPHVKWRLLWRVCLSREGSRGPHL 26
>06_03_1006 +
26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 531 TPTVTAPDADPFPTSPPLPT 590
TPT T P P PT PP P+
Sbjct: 154 TPTPTRPAPSPSPTGPPTPS 173
>04_03_0747 -
19251617-19251781,19252377-19252502,19252606-19252716,
19252931-19253679,19254034-19254167,19254595-19254740,
19255166-19255336,19255977-19256828
Length = 817
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 528 RTPTVT-APDADPFPTSPPLPTRAAGLAVR 614
RTP T P P PT PP+P AA L R
Sbjct: 137 RTPMPTPTPTPTPTPTRPPVPVWAAPLPAR 166
>01_07_0058 +
40799547-40799810,40799942-40799978,40800279-40800362,
40800563-40800615
Length = 145
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 528 RTPTVTAPDADPFPTSPPLPTRAAGLA 608
R P +AP A P P+SPP P A A
Sbjct: 25 RRPQPSAPLASPAPSSPPRPRSVAAAA 51
>12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693
Length = 407
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 531 TPTVTAPDADPFPTSPPLPTRAAGLAVRRAHGTHA 635
+P +P + P P + P P + G A+ HG HA
Sbjct: 333 SPPFPSPPSPPPPPTSPSPRQHRGWAIFAPHGGHA 367
>03_03_0052 +
14101886-14102117,14104271-14104422,14104545-14104818,
14104926-14105098
Length = 276
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 702 SATGLLLVGLTPILASETAPDGWHG 628
+A GL L L P L +TA D WHG
Sbjct: 3 AAVGLGLPFLPPFLRGKTAEDFWHG 27
>04_01_0082 +
897026-897028,897101-897350,898454-898608,898686-898967,
899078-899160,899335-899485,899896-899952,900279-900479
Length = 393
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 166 FDSTFGLRHLGSGWLGSCCNSF 101
F+S GL HLG+ W GSC F
Sbjct: 348 FNSDLGL-HLGNSWSGSCLAKF 368
>01_01_0921 +
7275019-7275363,7275422-7276147,7276289-7276346,
7276773-7276972
Length = 442
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 613 RTASPAARVGRGGEVGKGSASGAVTVGVR 527
R SP A V RGGE+ K + G +TV ++
Sbjct: 333 RDTSPFAFVSRGGELLKRTRQGTITVIIK 361
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,319,118
Number of Sequences: 37544
Number of extensions: 277773
Number of successful extensions: 1774
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1772
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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