BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0993 (723 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_04_0056 + 15476868-15476896,15477581-15478259 31 0.70 12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 31 0.93 06_02_0013 - 10581449-10585105 29 2.8 06_01_0374 + 2694546-2694755,2696339-2696932,2697910-2698188 29 2.8 05_03_0513 + 14919136-14920881 29 2.8 04_03_0178 + 12298502-12298878,12298896-12298998,12299211-122992... 29 2.8 07_03_1107 - 24024387-24024497,24025799-24026410 29 3.7 03_01_0566 - 4184379-4184491,4184616-4184726,4184800-4184889,418... 29 3.7 06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 29 4.9 04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 29 4.9 01_07_0058 + 40799547-40799810,40799942-40799978,40800279-408003... 29 4.9 12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693 28 6.5 03_03_0052 + 14101886-14102117,14104271-14104422,14104545-141048... 28 6.5 04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89... 28 8.6 01_01_0921 + 7275019-7275363,7275422-7276147,7276289-7276346,727... 28 8.6 >01_04_0056 + 15476868-15476896,15477581-15478259 Length = 235 Score = 31.5 bits (68), Expect = 0.70 Identities = 16/37 (43%), Positives = 19/37 (51%) Frame = +3 Query: 489 AATLAHQIIASELRTPTVTAPDADPFPTSPPLPTRAA 599 A TL H + + T TA A P P +PP PTR A Sbjct: 64 APTLPHSHLTNPRHPATPTATAATPKPNTPPDPTRPA 100 >12_02_0118 - 13869237-13869307,13869375-13869465,13870321-13870440, 13870668-13870795,13871159-13871270,13871719-13871817, 13871918-13871992,13872099-13872320,13873177-13874034 Length = 591 Score = 31.1 bits (67), Expect = 0.93 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +3 Query: 513 IASELRTPTVTAPDADPFPTSPPLPTR 593 + S +R P P A PFP SPP P++ Sbjct: 52 VPSSIRAPQAPPPGARPFPGSPPPPSQ 78 >06_02_0013 - 10581449-10585105 Length = 1218 Score = 29.5 bits (63), Expect = 2.8 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +2 Query: 281 SSTDSPPLANTPSKEEAPVVPAAKSTEEAAQETRL 385 SSTD P TP ++ +P VP S E A++ ++ Sbjct: 620 SSTDEPGTVVTPEEKVSPNVPVGHSEIEIAEDNKI 654 >06_01_0374 + 2694546-2694755,2696339-2696932,2697910-2698188 Length = 360 Score = 29.5 bits (63), Expect = 2.8 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +1 Query: 598 PDSPFDEPTVPMPPVGSGL 654 PD+P+ P VP PP SGL Sbjct: 299 PDNPWTVPEVPSPPTASGL 317 >05_03_0513 + 14919136-14920881 Length = 581 Score = 29.5 bits (63), Expect = 2.8 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +2 Query: 275 GDSSTDSPPLANTPSKEEAPVVPAAKSTEEAAQETRL 385 GDS++ P A+ P++ EAP + + E A Q+ +L Sbjct: 440 GDSASSKPDTADHPTEAEAPKLQPLEQHEVAEQDKKL 476 >04_03_0178 + 12298502-12298878,12298896-12298998,12299211-12299271, 12299423-12299486,12299825-12299996,12300765-12300863 Length = 291 Score = 29.5 bits (63), Expect = 2.8 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +3 Query: 534 PTVTAPDADPFPTSPPLPTRAAGLAVR 614 P+ T P P PT PLP+ AG + R Sbjct: 2 PSSTPPSVQPAPTVQPLPSSTAGQSTR 28 >07_03_1107 - 24024387-24024497,24025799-24026410 Length = 240 Score = 29.1 bits (62), Expect = 3.7 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +2 Query: 263 PAAAGDSSTDSPPLANTPSKEEAPVVPAAKSTEEA 367 PA A +T +PP A+TP AP PA + EA Sbjct: 44 PAPAAAPTTTTPPAASTP-PAAAPTTPATPAPAEA 77 >03_01_0566 - 4184379-4184491,4184616-4184726,4184800-4184889, 4184996-4185113 Length = 143 Score = 29.1 bits (62), Expect = 3.7 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -2 Query: 353 IWRPERRGLLLWTVCWLREGCRWSYL 276 +W P + LLW VC REG R +L Sbjct: 1 MWGPHVKWRLLWRVCLSREGSRGPHL 26 >06_03_1006 + 26844161-26844198,26844304-26844372,26844526-26844591, 26844831-26844902,26844982-26845053,26846179-26846244, 26846409-26846881,26846966-26847324,26847429-26847697, 26847780-26847918,26848323-26848462,26848612-26848768, 26848925-26848978,26849457-26849539,26851085-26851136 Length = 702 Score = 28.7 bits (61), Expect = 4.9 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +3 Query: 531 TPTVTAPDADPFPTSPPLPT 590 TPT T P P PT PP P+ Sbjct: 154 TPTPTRPAPSPSPTGPPTPS 173 >04_03_0747 - 19251617-19251781,19252377-19252502,19252606-19252716, 19252931-19253679,19254034-19254167,19254595-19254740, 19255166-19255336,19255977-19256828 Length = 817 Score = 28.7 bits (61), Expect = 4.9 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = +3 Query: 528 RTPTVT-APDADPFPTSPPLPTRAAGLAVR 614 RTP T P P PT PP+P AA L R Sbjct: 137 RTPMPTPTPTPTPTPTRPPVPVWAAPLPAR 166 >01_07_0058 + 40799547-40799810,40799942-40799978,40800279-40800362, 40800563-40800615 Length = 145 Score = 28.7 bits (61), Expect = 4.9 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +3 Query: 528 RTPTVTAPDADPFPTSPPLPTRAAGLA 608 R P +AP A P P+SPP P A A Sbjct: 25 RRPQPSAPLASPAPSSPPRPRSVAAAA 51 >12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693 Length = 407 Score = 28.3 bits (60), Expect = 6.5 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +3 Query: 531 TPTVTAPDADPFPTSPPLPTRAAGLAVRRAHGTHA 635 +P +P + P P + P P + G A+ HG HA Sbjct: 333 SPPFPSPPSPPPPPTSPSPRQHRGWAIFAPHGGHA 367 >03_03_0052 + 14101886-14102117,14104271-14104422,14104545-14104818, 14104926-14105098 Length = 276 Score = 28.3 bits (60), Expect = 6.5 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = -1 Query: 702 SATGLLLVGLTPILASETAPDGWHG 628 +A GL L L P L +TA D WHG Sbjct: 3 AAVGLGLPFLPPFLRGKTAEDFWHG 27 >04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-898967, 899078-899160,899335-899485,899896-899952,900279-900479 Length = 393 Score = 27.9 bits (59), Expect = 8.6 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -3 Query: 166 FDSTFGLRHLGSGWLGSCCNSF 101 F+S GL HLG+ W GSC F Sbjct: 348 FNSDLGL-HLGNSWSGSCLAKF 368 >01_01_0921 + 7275019-7275363,7275422-7276147,7276289-7276346, 7276773-7276972 Length = 442 Score = 27.9 bits (59), Expect = 8.6 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -3 Query: 613 RTASPAARVGRGGEVGKGSASGAVTVGVR 527 R SP A V RGGE+ K + G +TV ++ Sbjct: 333 RDTSPFAFVSRGGELLKRTRQGTITVIIK 361 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,319,118 Number of Sequences: 37544 Number of extensions: 277773 Number of successful extensions: 1774 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1638 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1772 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1886372480 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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