Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0993
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)          32   0.54 
SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)                     29   5.0  
SB_33373| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_53945| Best HMM Match : POPLD (HMM E-Value=1)                       28   6.7  
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)                  28   6.7  
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)                     28   6.7  
SB_48528| Best HMM Match : Extensin_2 (HMM E-Value=1)                  28   8.8  
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)                28   8.8  
SB_40272| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=2.4)            28   8.8  
SB_26050| Best HMM Match : TIL (HMM E-Value=2.5)                       28   8.8  

>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
          Length = 1039

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +3

Query: 486 DAATLAH--QIIASELRTPT--VTAPDADPFPTSPPLPTRAAGLAVRRA 620
           D+A  A+  ++I   LRT +  VT P+  P   SPP PT+A     RRA
Sbjct: 583 DSAPSAYTLRVIRENLRTSSLSVTRPEKSPQTPSPPKPTKAQKRKARRA 631


>SB_10655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 774

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 287 TDSPPLANTPSKEEAPVVPAAKSTEEAAQET 379
           TD PP+   P+K +AP+  A   T +    T
Sbjct: 664 TDGPPVTTAPAKTDAPMTTAVPMTTDVPMTT 694


>SB_52826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2126

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 587  DSCGRTRRSTSPRYPCHPSGAVSL--ANIGVKPTKSK 691
            +S   + RS+SP    H SG+ S   +NIG KPTK K
Sbjct: 1671 ESSPASSRSSSPPRQQHESGSESNIGSNIGEKPTKEK 1707


>SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 1568

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 477 ELEDAATLAHQ--IIASELRTPTVTAPDADPFPTSP 578
           EL+ AA  +++  I+A   R PT + P   P PTSP
Sbjct: 784 ELKRAACTSNRRIILAGRGRVPTTSPPTTTPVPTSP 819



 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 477  ELEDAATLAHQ--IIASELRTPTVTAPDADPFPTSP 578
            EL+ AA  +++  I+A   R PT + P   P PTSP
Sbjct: 903  ELKRAACTSNRRIILAGRGRVPTTSPPTTTPVPTSP 938


>SB_33373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 720

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 477 ELEDAATLAHQ--IIASELRTPTVTAPDADPFPTSP 578
           EL+ AA  +++  I+A   R PT + P   P PTSP
Sbjct: 52  ELKRAACTSNRRIILAGRGRVPTTSPPTTTPVPTSP 87


>SB_53945| Best HMM Match : POPLD (HMM E-Value=1)
          Length = 465

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 501 AHQIIASELRTPTVTAPDADPFPTSPPLP-TRAAGLAVR 614
           A  I++S L T  V  P+  P PT+P  P T A+G  +R
Sbjct: 16  AKTIVSSCLATLLVRPPETTPAPTTPTSPATPASGPPIR 54


>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
          Length = 1774

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 263  PAAAGDSSTDSPPLANTPSKEEAPVVPAAKSTEEAAQ 373
            P + G   + S PL++TP +E    +PA  STEE  Q
Sbjct: 1017 PDSIGTQPSPSQPLSSTPRRE----LPAKTSTEETTQ 1049


>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
          Length = 1832

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 489  AATLAHQIIASELRTPTVTAPDADPFPTSPPLP 587
            A+ + +  +  + RTP +TA +  P  TSPP+P
Sbjct: 1267 ASHIENTQVNCKTRTPGITAQEDPPKSTSPPVP 1299


>SB_48528| Best HMM Match : Extensin_2 (HMM E-Value=1)
          Length = 329

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 601 DSPFDEPTVPMPPVGSGLAR*YRSQTYQEQ 690
           +SPF E  VP+P  GS L +  R   YQE+
Sbjct: 122 ESPFQEKGVPLPRGGSPLTK-RRESHYQEE 150


>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
          Length = 382

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 534 PTVTAPDADPFPTSPPLP 587
           PT  AP + P PT+PP P
Sbjct: 189 PTPPAPPSPPIPTAPPTP 206


>SB_40272| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=2.4)
          Length = 843

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 507 QIIASELRTPT--VTAPDADPFPTSPPLPTRAAGLAVRRA 620
           ++I   LRT +  VT P+  P    PP PT+A     RRA
Sbjct: 646 KVIRENLRTSSLPVTPPEKIPKTPLPPKPTKAQKRKARRA 685


>SB_26050| Best HMM Match : TIL (HMM E-Value=2.5)
          Length = 140

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 304 SQHTVQRRSPRRSGRQIYRGGSSRDAALIEQPRNVASRPASCS 432
           S+ T +RR   +  R++    SS  A L+E  +   +R A+C+
Sbjct: 93  SRFTFERRGKEKEKRRLRDNASSAQAILLEIVKRKVTRKATCA 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,727,570
Number of Sequences: 59808
Number of extensions: 255136
Number of successful extensions: 1258
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)