Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0993
(723 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK124395-1|BAC85845.1| 1235|Homo sapiens protein ( Homo sapiens ... 31 5.5
X15306-1|CAA33366.1| 1020|Homo sapiens heavy neurofilament subun... 30 9.6
BC073969-1|AAH73969.1| 1026|Homo sapiens NEFH protein protein. 30 9.6
BC018906-1|AAH18906.1| 456|Homo sapiens B-cell linker protein. 30 9.6
AM180337-1|CAJ55331.1| 404|Homo sapiens B-cell linker protein p... 30 9.6
AM180336-1|CAJ55330.1| 421|Homo sapiens B-cell linker protein p... 30 9.6
AK097078-1|BAC04942.1| 666|Homo sapiens protein ( Homo sapiens ... 30 9.6
AF203032-1|AAF13722.1| 1026|Homo sapiens neurofilament protein p... 30 9.6
AF180756-1|AAF20382.1| 456|Homo sapiens B cell linker protein B... 30 9.6
AF068180-1|AAC39936.1| 456|Homo sapiens B cell linker protein B... 30 9.6
AB020652-1|BAA74868.2| 1034|Homo sapiens KIAA0845 protein protein. 30 9.6
>AK124395-1|BAC85845.1| 1235|Homo sapiens protein ( Homo sapiens
cDNA FLJ42404 fis, clone ASTRO3000301, highly similar
to Human G2 protein. ).
Length = 1235
Score = 30.7 bits (66), Expect = 5.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 531 TPTVTAPDADPFPTSPPLPT 590
+P +TAP +P P+ PPLP+
Sbjct: 312 SPIITAPRTNPLPSGPPLPS 331
>X15306-1|CAA33366.1| 1020|Homo sapiens heavy neurofilament subunit
protein.
Length = 1020
Score = 29.9 bits (64), Expect = 9.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 260 KPAAAGDSSTDSPPLANTPSKEEAPVVPAAKSTEE 364
K A + SP A +P+KEEA P AKS E+
Sbjct: 535 KEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEK 569
>BC073969-1|AAH73969.1| 1026|Homo sapiens NEFH protein protein.
Length = 1026
Score = 29.9 bits (64), Expect = 9.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 260 KPAAAGDSSTDSPPLANTPSKEEAPVVPAAKSTEE 364
K A + SP A +P+KEEA P AKS E+
Sbjct: 535 KEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEK 569
>BC018906-1|AAH18906.1| 456|Homo sapiens B-cell linker protein.
Length = 456
Score = 29.9 bits (64), Expect = 9.6
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +2
Query: 608 RSTSPRY--PCHPSGAVSLANIGVKPTKSKPVAEPDP 712
RST P P P G S N G TKS P A P P
Sbjct: 208 RSTKPNSSTPASPPGTASGRNSGAWETKSPPPAAPSP 244
>AM180337-1|CAJ55331.1| 404|Homo sapiens B-cell linker protein
protein.
Length = 404
Score = 29.9 bits (64), Expect = 9.6
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +2
Query: 608 RSTSPRY--PCHPSGAVSLANIGVKPTKSKPVAEPDP 712
RST P P P G S N G TKS P A P P
Sbjct: 208 RSTKPNSSTPASPPGTASGRNSGAWETKSPPPAAPSP 244
>AM180336-1|CAJ55330.1| 421|Homo sapiens B-cell linker protein
protein.
Length = 421
Score = 29.9 bits (64), Expect = 9.6
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +2
Query: 608 RSTSPRY--PCHPSGAVSLANIGVKPTKSKPVAEPDP 712
RST P P P G S N G TKS P A P P
Sbjct: 208 RSTKPNSSTPASPPGTASGRNSGAWETKSPPPAAPSP 244
>AK097078-1|BAC04942.1| 666|Homo sapiens protein ( Homo sapiens
cDNA FLJ39759 fis, clone SMINT2019153, weakly similar to
ATP-DEPENDENT RNA HELICASE DBP73D. ).
Length = 666
Score = 29.9 bits (64), Expect = 9.6
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 269 AAGDSSTDSPPLANTPSKEEAPVVPAAKSTEEAAQE 376
A +S+ ++P + S EEAP P+A S+EEA E
Sbjct: 99 AGAESNEEAPGEPSAGSSEEAPGEPSAGSSEEAPGE 134
>AF203032-1|AAF13722.1| 1026|Homo sapiens neurofilament protein
protein.
Length = 1026
Score = 29.9 bits (64), Expect = 9.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 260 KPAAAGDSSTDSPPLANTPSKEEAPVVPAAKSTEE 364
K A + SP A +P+KEEA P AKS E+
Sbjct: 535 KEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEK 569
>AF180756-1|AAF20382.1| 456|Homo sapiens B cell linker protein BLNK
protein.
Length = 456
Score = 29.9 bits (64), Expect = 9.6
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +2
Query: 608 RSTSPRY--PCHPSGAVSLANIGVKPTKSKPVAEPDP 712
RST P P P G S N G TKS P A P P
Sbjct: 208 RSTKPNSSTPASPPGTASGRNSGAWETKSPPPAAPSP 244
>AF068180-1|AAC39936.1| 456|Homo sapiens B cell linker protein BLNK
protein.
Length = 456
Score = 29.9 bits (64), Expect = 9.6
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +2
Query: 608 RSTSPRY--PCHPSGAVSLANIGVKPTKSKPVAEPDP 712
RST P P P G S N G TKS P A P P
Sbjct: 208 RSTKPNSSTPASPPGTASGRNSGAWETKSPPPAAPSP 244
>AB020652-1|BAA74868.2| 1034|Homo sapiens KIAA0845 protein protein.
Length = 1034
Score = 29.9 bits (64), Expect = 9.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 260 KPAAAGDSSTDSPPLANTPSKEEAPVVPAAKSTEE 364
K A + SP A +P+KEEA P AKS E+
Sbjct: 543 KEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEK 577
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,074,981
Number of Sequences: 237096
Number of extensions: 1332175
Number of successful extensions: 6304
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6284
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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