BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0993 (723 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AK124395-1|BAC85845.1| 1235|Homo sapiens protein ( Homo sapiens ... 31 5.5 X15306-1|CAA33366.1| 1020|Homo sapiens heavy neurofilament subun... 30 9.6 BC073969-1|AAH73969.1| 1026|Homo sapiens NEFH protein protein. 30 9.6 BC018906-1|AAH18906.1| 456|Homo sapiens B-cell linker protein. 30 9.6 AM180337-1|CAJ55331.1| 404|Homo sapiens B-cell linker protein p... 30 9.6 AM180336-1|CAJ55330.1| 421|Homo sapiens B-cell linker protein p... 30 9.6 AK097078-1|BAC04942.1| 666|Homo sapiens protein ( Homo sapiens ... 30 9.6 AF203032-1|AAF13722.1| 1026|Homo sapiens neurofilament protein p... 30 9.6 AF180756-1|AAF20382.1| 456|Homo sapiens B cell linker protein B... 30 9.6 AF068180-1|AAC39936.1| 456|Homo sapiens B cell linker protein B... 30 9.6 AB020652-1|BAA74868.2| 1034|Homo sapiens KIAA0845 protein protein. 30 9.6 >AK124395-1|BAC85845.1| 1235|Homo sapiens protein ( Homo sapiens cDNA FLJ42404 fis, clone ASTRO3000301, highly similar to Human G2 protein. ). Length = 1235 Score = 30.7 bits (66), Expect = 5.5 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +3 Query: 531 TPTVTAPDADPFPTSPPLPT 590 +P +TAP +P P+ PPLP+ Sbjct: 312 SPIITAPRTNPLPSGPPLPS 331 >X15306-1|CAA33366.1| 1020|Homo sapiens heavy neurofilament subunit protein. Length = 1020 Score = 29.9 bits (64), Expect = 9.6 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +2 Query: 260 KPAAAGDSSTDSPPLANTPSKEEAPVVPAAKSTEE 364 K A + SP A +P+KEEA P AKS E+ Sbjct: 535 KEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEK 569 >BC073969-1|AAH73969.1| 1026|Homo sapiens NEFH protein protein. Length = 1026 Score = 29.9 bits (64), Expect = 9.6 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +2 Query: 260 KPAAAGDSSTDSPPLANTPSKEEAPVVPAAKSTEE 364 K A + SP A +P+KEEA P AKS E+ Sbjct: 535 KEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEK 569 >BC018906-1|AAH18906.1| 456|Homo sapiens B-cell linker protein. Length = 456 Score = 29.9 bits (64), Expect = 9.6 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Frame = +2 Query: 608 RSTSPRY--PCHPSGAVSLANIGVKPTKSKPVAEPDP 712 RST P P P G S N G TKS P A P P Sbjct: 208 RSTKPNSSTPASPPGTASGRNSGAWETKSPPPAAPSP 244 >AM180337-1|CAJ55331.1| 404|Homo sapiens B-cell linker protein protein. Length = 404 Score = 29.9 bits (64), Expect = 9.6 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Frame = +2 Query: 608 RSTSPRY--PCHPSGAVSLANIGVKPTKSKPVAEPDP 712 RST P P P G S N G TKS P A P P Sbjct: 208 RSTKPNSSTPASPPGTASGRNSGAWETKSPPPAAPSP 244 >AM180336-1|CAJ55330.1| 421|Homo sapiens B-cell linker protein protein. Length = 421 Score = 29.9 bits (64), Expect = 9.6 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Frame = +2 Query: 608 RSTSPRY--PCHPSGAVSLANIGVKPTKSKPVAEPDP 712 RST P P P G S N G TKS P A P P Sbjct: 208 RSTKPNSSTPASPPGTASGRNSGAWETKSPPPAAPSP 244 >AK097078-1|BAC04942.1| 666|Homo sapiens protein ( Homo sapiens cDNA FLJ39759 fis, clone SMINT2019153, weakly similar to ATP-DEPENDENT RNA HELICASE DBP73D. ). Length = 666 Score = 29.9 bits (64), Expect = 9.6 Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = +2 Query: 269 AAGDSSTDSPPLANTPSKEEAPVVPAAKSTEEAAQE 376 A +S+ ++P + S EEAP P+A S+EEA E Sbjct: 99 AGAESNEEAPGEPSAGSSEEAPGEPSAGSSEEAPGE 134 >AF203032-1|AAF13722.1| 1026|Homo sapiens neurofilament protein protein. Length = 1026 Score = 29.9 bits (64), Expect = 9.6 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +2 Query: 260 KPAAAGDSSTDSPPLANTPSKEEAPVVPAAKSTEE 364 K A + SP A +P+KEEA P AKS E+ Sbjct: 535 KEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEK 569 >AF180756-1|AAF20382.1| 456|Homo sapiens B cell linker protein BLNK protein. Length = 456 Score = 29.9 bits (64), Expect = 9.6 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Frame = +2 Query: 608 RSTSPRY--PCHPSGAVSLANIGVKPTKSKPVAEPDP 712 RST P P P G S N G TKS P A P P Sbjct: 208 RSTKPNSSTPASPPGTASGRNSGAWETKSPPPAAPSP 244 >AF068180-1|AAC39936.1| 456|Homo sapiens B cell linker protein BLNK protein. Length = 456 Score = 29.9 bits (64), Expect = 9.6 Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Frame = +2 Query: 608 RSTSPRY--PCHPSGAVSLANIGVKPTKSKPVAEPDP 712 RST P P P G S N G TKS P A P P Sbjct: 208 RSTKPNSSTPASPPGTASGRNSGAWETKSPPPAAPSP 244 >AB020652-1|BAA74868.2| 1034|Homo sapiens KIAA0845 protein protein. Length = 1034 Score = 29.9 bits (64), Expect = 9.6 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +2 Query: 260 KPAAAGDSSTDSPPLANTPSKEEAPVVPAAKSTEE 364 K A + SP A +P+KEEA P AKS E+ Sbjct: 543 KEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEK 577 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 78,074,981 Number of Sequences: 237096 Number of extensions: 1332175 Number of successful extensions: 6304 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5629 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6284 length of database: 76,859,062 effective HSP length: 88 effective length of database: 55,994,614 effective search space used: 8511181328 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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