Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0993
(723 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106577-15|AAC78181.1| 104|Caenorhabditis elegans Hypothetical... 31 0.83
Z92807-2|CAD21652.1| 689|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z92807-1|CAB07264.1| 747|Caenorhabditis elegans Hypothetical pr... 30 1.5
AB039949-1|BAC06512.1| 747|Caenorhabditis elegans kinesin protein. 30 1.5
AB017164-1|BAA32661.1| 689|Caenorhabditis elegans Kinesin like ... 30 1.5
U46671-2|AAA85748.1| 205|Caenorhabditis elegans Hypothetical pr... 30 1.9
AF026215-8|AAB71317.1| 415|Caenorhabditis elegans Hypothetical ... 30 1.9
Z49068-2|CAA88855.1| 389|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical p... 29 4.4
Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical pr... 29 4.4
AF106577-12|AAC78182.1| 106|Caenorhabditis elegans Hypothetical... 28 5.9
>AF106577-15|AAC78181.1| 104|Caenorhabditis elegans Hypothetical
protein F46F5.9 protein.
Length = 104
Score = 31.1 bits (67), Expect = 0.83
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 263 PAAAGDSSTDSPPLANTPSKEEAPVVPAAKST 358
P+ A +S+TD PP A TP+ E+A AA++T
Sbjct: 52 PSTAKESATDPPP-AGTPAPEKAAEAEAAEAT 82
>Z92807-2|CAD21652.1| 689|Caenorhabditis elegans Hypothetical
protein K11D9.1b protein.
Length = 689
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +3
Query: 483 EDAATLAHQIIASELRT--PTVTAPDADPFPTSPPLPTRAAGLAVRRAHGTHA 635
E T + EL T P++ AP P P PP T A AV R +G HA
Sbjct: 37 EKGETKGKESSLEELLTLNPSLQAPKPTP-PPQPPQKTLQASTAVNRQNGIHA 88
>Z92807-1|CAB07264.1| 747|Caenorhabditis elegans Hypothetical
protein K11D9.1a protein.
Length = 747
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +3
Query: 483 EDAATLAHQIIASELRT--PTVTAPDADPFPTSPPLPTRAAGLAVRRAHGTHA 635
E T + EL T P++ AP P P PP T A AV R +G HA
Sbjct: 95 EKGETKGKESSLEELLTLNPSLQAPKPTP-PPQPPQKTLQASTAVNRQNGIHA 146
>AB039949-1|BAC06512.1| 747|Caenorhabditis elegans kinesin protein.
Length = 747
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +3
Query: 483 EDAATLAHQIIASELRT--PTVTAPDADPFPTSPPLPTRAAGLAVRRAHGTHA 635
E T + EL T P++ AP P P PP T A AV R +G HA
Sbjct: 95 EKGETKGKESSLEELLTLNPSLQAPKPTP-PPQPPQKTLQASTAVNRQNGIHA 146
>AB017164-1|BAA32661.1| 689|Caenorhabditis elegans Kinesin like
protein (klp-7) protein.
Length = 689
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +3
Query: 483 EDAATLAHQIIASELRT--PTVTAPDADPFPTSPPLPTRAAGLAVRRAHGTHA 635
E T + EL T P++ AP P P PP T A AV R +G HA
Sbjct: 37 EKGETKGKESSLEELLTLNPSLQAPKPTP-PPQPPQKTLQASTAVNRQNGIHA 88
>U46671-2|AAA85748.1| 205|Caenorhabditis elegans Hypothetical
protein C14E2.3 protein.
Length = 205
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 486 DAATLAHQIIASELRTPTVTAPDADPFPTSPPLPTRAAGLAVR 614
D+++ A Q + ++ +V P+ PFPT PP+P + L R
Sbjct: 124 DSSSTAEQEPPQKTQSTSVL-PNVSPFPTPPPVPPKPTHLMAR 165
>AF026215-8|AAB71317.1| 415|Caenorhabditis elegans Hypothetical
protein F09G2.9 protein.
Length = 415
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 266 AAAGDSSTDSPPLANTPSKEEAPVVPAAKSTEEAAQE 376
A A P+ NT K++A PAA EAA+E
Sbjct: 173 APASSEEKKDEPVVNTEEKKDAAEAPAADEESEAAEE 209
>Z49068-2|CAA88855.1| 389|Caenorhabditis elegans Hypothetical
protein K01C8.2 protein.
Length = 389
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 684 LVGLTPILASETAPDGWHGYRGLVERRVR 598
L G TPI + + P GW+ Y+ V+ VR
Sbjct: 281 LTGSTPIPENLSCPTGWNSYKNEVDNAVR 309
>Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical
protein C12D8.1c protein.
Length = 548
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 333 GASSLDGVLAKGGLSVELSPAAAGFSGV 250
G S + G+ AK G V++SP A SGV
Sbjct: 25 GGSEIQGIQAKAGCRVQMSPDADPSSGV 52
>Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical
protein C12D8.1b protein.
Length = 611
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 333 GASSLDGVLAKGGLSVELSPAAAGFSGV 250
G S + G+ AK G V++SP A SGV
Sbjct: 88 GGSEIQGIQAKAGCRVQMSPDADPSSGV 115
>Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical
protein C12D8.1a protein.
Length = 589
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 333 GASSLDGVLAKGGLSVELSPAAAGFSGV 250
G S + G+ AK G V++SP A SGV
Sbjct: 66 GGSEIQGIQAKAGCRVQMSPDADPSSGV 93
>AF106577-12|AAC78182.1| 106|Caenorhabditis elegans Hypothetical
protein F46F5.6 protein.
Length = 106
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 266 AAAGDSSTDSPPLANTPSKEEAPVVPAAKST 358
+ A +S+TD PP A TP+ E+A AA++T
Sbjct: 55 STAKESATDPPP-AGTPAPEKAAEAEAAEAT 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,283,974
Number of Sequences: 27780
Number of extensions: 183473
Number of successful extensions: 926
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -