Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0993
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.9  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 280 ISGSRWFLWSRFWNSGTG 227
           +S + WF W    NSG G
Sbjct: 610 LSSAVWFAWGVLLNSGIG 627


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 350 WRPERRGLLLWTVCWLREGCRWSYLRQPLVSL 255
           +R +RRG + +T+  +RE  R  Y ++  + L
Sbjct: 133 YRSKRRGFVYYTMGQIREVARHFYHKELQIEL 164


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 516 ASELRTPTVTAPDADPFPTSPPLPTRA 596
           A+ L    + AP +   PTS P  TRA
Sbjct: 111 ANPLLAEKLAAPSSQASPTSIPYATRA 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,775
Number of Sequences: 438
Number of extensions: 2139
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)