Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0993
         (723 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48880.2 68416.m05340 F-box family protein N7 protein - Medic...    30   1.8  
At3g48880.1 68416.m05339 F-box family protein N7 protein - Medic...    30   1.8  
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1...    29   4.1  
At5g07510.1 68418.m00860 glycine-rich protein (GRP14) oleosin; g...    28   7.2  
At5g42030.1 68418.m05117 expressed protein similar to unknown pr...    27   9.5  
At4g10640.1 68417.m01738 calmodulin-binding family protein conta...    27   9.5  

>At3g48880.2 68416.m05340 F-box family protein N7 protein - Medicago
           truncatula, EMBL:CAA76808 ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 309

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 175 FNCFDSTFGLRHLGSGWLGSCCN 107
           F+ F+ T GL H+  GW  +CC+
Sbjct: 28  FSVFELTSGLAHVCRGWRAACCD 50


>At3g48880.1 68416.m05339 F-box family protein N7 protein - Medicago
           truncatula, EMBL:CAA76808 ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 309

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 175 FNCFDSTFGLRHLGSGWLGSCCN 107
           F+ F+ T GL H+  GW  +CC+
Sbjct: 28  FSVFELTSGLAHVCRGWRAACCD 50


>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
           (KTN1) [Arabidopsis thaliana] GI:14133602
          Length = 523

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 622 WARRTASPAARVGRGGEVGKGSASGAVTVGVRSSLA 515
           WAR    P  R G     G+G A+   T G RSS A
Sbjct: 153 WAR---GPTTRTGPASRGGRGGATSKSTAGARSSTA 185


>At5g07510.1 68418.m00860 glycine-rich protein (GRP14) oleosin;
           glycine-rich protein 14 (GRP14) PMID:11431566;
           PIR:JQ1063
          Length = 193

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +2

Query: 263 PAAAGDSSTDSPPLANTPSKEEAPVV---PAAKST 358
           P AAG +S D+PP    P+   AP     PAA  T
Sbjct: 158 PGAAGAASGDAPPAETAPAAGAAPAAGAEPAAPPT 192


>At5g42030.1 68418.m05117 expressed protein similar to unknown
           protein (emb|CAB66408.1)
          Length = 279

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 605 RRSTSP-RYPCHPSGAVSLANIGVKPTKSKPVAEPDPKRS 721
           +RS SP R+P   SG++   +      K  P+A P+P+R+
Sbjct: 203 KRSNSPMRFPLLRSGSLLKRSSSPSQPKKPPLALPEPQRA 242


>At4g10640.1 68417.m01738 calmodulin-binding family protein contains
           IQ calmodulin-binding motif, Pfam:PF00612
          Length = 423

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 608 RSTSPRYPCHPSGAVSLANIGVKPTKSKPVAEPDPKR 718
           RS SPR PC PS          +  K+K   +  P+R
Sbjct: 329 RSASPRIPCSPSSMQPNYMSATESAKAKARTQSTPRR 365


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,146,357
Number of Sequences: 28952
Number of extensions: 179947
Number of successful extensions: 809
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)