BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0992 (680 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 29 0.47 SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 28 1.1 SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 28 1.1 SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 28 1.1 SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 27 3.3 SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 26 4.4 SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 4.4 SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 26 5.8 SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 25 7.7 SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 25 7.7 >SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1101 Score = 29.5 bits (63), Expect = 0.47 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = +3 Query: 369 LQQIILLMLEATICRRTYDKTIEIAKNHGE-PLKINNEVSELF 494 L QIILL E C+ TY +++EI KN E P E S +F Sbjct: 395 LDQIILLTQEGE-CQHTYVRSVEIIKNIAEMPTVDAEERSRIF 436 >SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizosaccharomyces pombe|chr 1|||Manual Length = 2073 Score = 28.3 bits (60), Expect = 1.1 Identities = 33/141 (23%), Positives = 63/141 (44%) Frame = +3 Query: 240 KDMTSPCLLYNYAVILFHSRYYYQCVVILEKLLSSKSIKDARLLQQIILLMLEATICRRT 419 +DM S L+ N HS Y + + +LS +++ D L+ L ++ + R Sbjct: 1810 EDMRSKGLVQNDCAFAGHSLGEYSALSAMGDVLSIEALVDLVFLRG---LTMQNAVHRDE 1866 Query: 420 YDKTIEIAKNHGEPLKINNEVSELFERIISRAQLLVGQKVKLNLKPDSIENIFVIAQQHY 599 ++ + P +++ ++ R I +GQ+ L L+ I N V QQ+ Sbjct: 1867 LGRS-DYGMVAANPSRVSASFTDAALRFIVDH---IGQQTNLLLE---IVNYNVENQQYV 1919 Query: 600 INGNVKEAANILGILQNLKVQ 662 ++GN+ + + +L LKVQ Sbjct: 1920 VSGNLLSLSTLGHVLNFLKVQ 1940 >SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces pombe|chr 3|||Manual Length = 296 Score = 28.3 bits (60), Expect = 1.1 Identities = 10/32 (31%), Positives = 20/32 (62%) Frame = +2 Query: 158 GWRDEECGKIQKCHYTVIRVKLFGRRSQGYDF 253 GW ++ G++ C+Y R+ ++ +S+G DF Sbjct: 204 GWSEQVPGRLYVCNYCHRRLGVWNLQSEGQDF 235 >SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces pombe|chr 1|||Manual Length = 2104 Score = 28.3 bits (60), Expect = 1.1 Identities = 28/137 (20%), Positives = 67/137 (48%), Gaps = 7/137 (5%) Frame = +3 Query: 78 QHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLSG-----LNYLDVEVK 242 + LS LEN V ++++ + A + + ++ N + + ++ LS L+ + + + Sbjct: 902 ERLSSLENQVTIADEKYEFLYAEKQSIEEDLANKQTEISYLSDLSSTLEKKLSSIKKDEQ 961 Query: 243 DMTSPC--LLYNYAVILFHSRYYYQCVVILEKLLSSKSIKDARLLQQIILLMLEATICRR 416 ++S L +Y I+ ++ Q + LEK ++ K++ L ++++ L E + +R Sbjct: 962 TISSKYKELEKDYLNIMADYQHSSQHLSNLEKAINEKNLNIRELNEKLMRLDDELLLKQR 1021 Query: 417 TYDKTIEIAKNHGEPLK 467 +YD ++ + LK Sbjct: 1022 SYDTKVQELREENASLK 1038 >SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit Orc1|Schizosaccharomyces pombe|chr 2|||Manual Length = 707 Score = 26.6 bits (56), Expect = 3.3 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = -3 Query: 123 FYSKFPQGFPSR*DVVMPLCSPFLRNIGELK 31 F+SKFP G P++ + P C+ F+R LK Sbjct: 156 FFSKFPAGIPTKRKDLFP-CNFFIRRGVHLK 185 >SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces pombe|chr 2|||Manual Length = 857 Score = 26.2 bits (55), Expect = 4.4 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = +3 Query: 561 SIENIFVIAQQHYINGNVKEAANILG 638 SI+ +F+++ H++ GN K A + LG Sbjct: 431 SIQAVFLLSLYHFLTGNFKCAYSYLG 456 >SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 2176 Score = 26.2 bits (55), Expect = 4.4 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +3 Query: 78 QHLSDLENLVGTSNKRVQHNKAV 146 +H DLEN V T R+ NKAV Sbjct: 445 KHQVDLENYVFTEGSRLMSNKAV 467 >SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces pombe|chr 1|||Manual Length = 756 Score = 25.8 bits (54), Expect = 5.8 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 5/86 (5%) Frame = +3 Query: 222 YLDVEVKDMTSPCLLYNYAVILFHSRYYYQCVVILEKL---LSSKSIKDARLLQQI--IL 386 Y VE+ D + A+ L + Y Y+ + LEK +S+K KD ++ ++ Sbjct: 443 YTQVELLDYQESSTFKDIAIRLNTAEYIYRTTIELEKRFQEISNKEFKDKMSFSEVLEVI 502 Query: 387 LMLEATICRRTYDKTIEIAKNHGEPL 464 T+ + K + + EPL Sbjct: 503 SSSRGTLLKFATGKFENVLNSDLEPL 528 >SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc es pombe|chr 2|||Manual Length = 372 Score = 25.4 bits (53), Expect = 7.7 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = -1 Query: 662 LYFKVL*YPQYISCFLYITIDVMLLCYNKYVLY 564 LYF +P+ + L IT+ ++LL + +LY Sbjct: 3 LYFSAFRHPKRLGLCLLITLSIILLGWQCVLLY 35 >SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1253 Score = 25.4 bits (53), Expect = 7.7 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Frame = +3 Query: 45 CFLKKDYTAALQHLSDLENLVGT-SNKRVQH 134 C+LK+ Y AL HL ++EN N +QH Sbjct: 883 CYLKR-YERALGHLKEMENAFDEFKNFTIQH 912 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,739,528 Number of Sequences: 5004 Number of extensions: 54614 Number of successful extensions: 142 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 139 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 142 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 313902888 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -