Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0992
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    29   0.47 
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    28   1.1  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    28   1.1  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    28   1.1  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    27   3.3  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   4.4  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   4.4  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   5.8  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    25   7.7  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   7.7  

>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 369 LQQIILLMLEATICRRTYDKTIEIAKNHGE-PLKINNEVSELF 494
           L QIILL  E   C+ TY +++EI KN  E P     E S +F
Sbjct: 395 LDQIILLTQEGE-CQHTYVRSVEIIKNIAEMPTVDAEERSRIF 436


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 33/141 (23%), Positives = 63/141 (44%)
 Frame = +3

Query: 240  KDMTSPCLLYNYAVILFHSRYYYQCVVILEKLLSSKSIKDARLLQQIILLMLEATICRRT 419
            +DM S  L+ N      HS   Y  +  +  +LS +++ D   L+    L ++  + R  
Sbjct: 1810 EDMRSKGLVQNDCAFAGHSLGEYSALSAMGDVLSIEALVDLVFLRG---LTMQNAVHRDE 1866

Query: 420  YDKTIEIAKNHGEPLKINNEVSELFERIISRAQLLVGQKVKLNLKPDSIENIFVIAQQHY 599
              ++ +       P +++   ++   R I      +GQ+  L L+   I N  V  QQ+ 
Sbjct: 1867 LGRS-DYGMVAANPSRVSASFTDAALRFIVDH---IGQQTNLLLE---IVNYNVENQQYV 1919

Query: 600  INGNVKEAANILGILQNLKVQ 662
            ++GN+   + +  +L  LKVQ
Sbjct: 1920 VSGNLLSLSTLGHVLNFLKVQ 1940


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 158 GWRDEECGKIQKCHYTVIRVKLFGRRSQGYDF 253
           GW ++  G++  C+Y   R+ ++  +S+G DF
Sbjct: 204 GWSEQVPGRLYVCNYCHRRLGVWNLQSEGQDF 235


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 28/137 (20%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
 Frame = +3

Query: 78   QHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLSG-----LNYLDVEVK 242
            + LS LEN V  ++++ +   A  + +  ++ N +   + ++ LS      L+ +  + +
Sbjct: 902  ERLSSLENQVTIADEKYEFLYAEKQSIEEDLANKQTEISYLSDLSSTLEKKLSSIKKDEQ 961

Query: 243  DMTSPC--LLYNYAVILFHSRYYYQCVVILEKLLSSKSIKDARLLQQIILLMLEATICRR 416
             ++S    L  +Y  I+   ++  Q +  LEK ++ K++    L ++++ L  E  + +R
Sbjct: 962  TISSKYKELEKDYLNIMADYQHSSQHLSNLEKAINEKNLNIRELNEKLMRLDDELLLKQR 1021

Query: 417  TYDKTIEIAKNHGEPLK 467
            +YD  ++  +     LK
Sbjct: 1022 SYDTKVQELREENASLK 1038


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 123 FYSKFPQGFPSR*DVVMPLCSPFLRNIGELK 31
           F+SKFP G P++   + P C+ F+R    LK
Sbjct: 156 FFSKFPAGIPTKRKDLFP-CNFFIRRGVHLK 185


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 561 SIENIFVIAQQHYINGNVKEAANILG 638
           SI+ +F+++  H++ GN K A + LG
Sbjct: 431 SIQAVFLLSLYHFLTGNFKCAYSYLG 456


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 78  QHLSDLENLVGTSNKRVQHNKAV 146
           +H  DLEN V T   R+  NKAV
Sbjct: 445 KHQVDLENYVFTEGSRLMSNKAV 467


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
 Frame = +3

Query: 222 YLDVEVKDMTSPCLLYNYAVILFHSRYYYQCVVILEKL---LSSKSIKDARLLQQI--IL 386
           Y  VE+ D        + A+ L  + Y Y+  + LEK    +S+K  KD     ++  ++
Sbjct: 443 YTQVELLDYQESSTFKDIAIRLNTAEYIYRTTIELEKRFQEISNKEFKDKMSFSEVLEVI 502

Query: 387 LMLEATICRRTYDKTIEIAKNHGEPL 464
                T+ +    K   +  +  EPL
Sbjct: 503 SSSRGTLLKFATGKFENVLNSDLEPL 528


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 662 LYFKVL*YPQYISCFLYITIDVMLLCYNKYVLY 564
           LYF    +P+ +   L IT+ ++LL +   +LY
Sbjct: 3   LYFSAFRHPKRLGLCLLITLSIILLGWQCVLLY 35


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 45  CFLKKDYTAALQHLSDLENLVGT-SNKRVQH 134
           C+LK+ Y  AL HL ++EN      N  +QH
Sbjct: 883 CYLKR-YERALGHLKEMENAFDEFKNFTIQH 912


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,528
Number of Sequences: 5004
Number of extensions: 54614
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)