BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0992 (680 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104 33 0.21 11_06_0080 - 19880319-19880957,19881800-19881948,19882266-198835... 31 0.64 10_08_0076 + 14685364-14686468,14686521-14686540,14686614-146867... 31 0.84 02_01_0423 - 3092863-3094959 31 0.84 04_01_0106 + 1102880-1105691,1105781-1105806 29 2.6 02_01_0738 + 5501894-5501978,5502130-5502369,5502880-5503079,550... 28 6.0 >12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104 Length = 744 Score = 33.1 bits (72), Expect = 0.21 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Frame = +3 Query: 129 QHNKAVVEFMAGEMKNVEKFKNAITQLSGLNYLDVEVKDMTSPCL-----LYNYAVILFH 293 QHN V +F A +K++ + + + L YLD E S CL +Y++ V+L Sbjct: 555 QHNAKVADFGASALKSMNESEFIMFVQGTLGYLDPE--SFISHCLTDKSDVYSFGVVLLE 612 Query: 294 SRYYYQCVVILEKLLSSKSIKDARLLQQIILLMLEATICRRTYDKTI 434 ++ ++ + + SI + L LLM + I R D+ I Sbjct: 613 -------LMTRKRAIFANSINEKESLSYSFLLMFDQNIHRNMLDREI 652 >11_06_0080 - 19880319-19880957,19881800-19881948,19882266-19883589, 19883766-19883953,19884034-19884499 Length = 921 Score = 31.5 bits (68), Expect = 0.64 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = +3 Query: 501 IISRAQLLVGQKVKLNLKPDSIENIFVIAQQHYINGNVKEAANILGILQN 650 +I A+ + + ++ KPDS E++ V A I+GNV ++GIL+N Sbjct: 709 LILEARKKLSRNLQSESKPDSNEDM-VAASSSNIDGNVPSPVEVVGILKN 757 >10_08_0076 + 14685364-14686468,14686521-14686540,14686614-14686749, 14687537-14687664,14687742-14687855 Length = 500 Score = 31.1 bits (67), Expect = 0.84 Identities = 15/50 (30%), Positives = 28/50 (56%) Frame = +3 Query: 504 ISRAQLLVGQKVKLNLKPDSIENIFVIAQQHYINGNVKEAANILGILQNL 653 + R +L+ ++ + ++ NI V+A QH+ +G K + LG L+NL Sbjct: 286 LQRLKLICEDRLCNYIGVSTVLNILVLADQHHCDGLKKACFSFLGSLENL 335 >02_01_0423 - 3092863-3094959 Length = 698 Score = 31.1 bits (67), Expect = 0.84 Identities = 17/61 (27%), Positives = 30/61 (49%) Frame = +3 Query: 33 LAHQCFLKKDYTAALQHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLS 212 L H CFL+ +++ ++ L+NLV T + + G++K +EK A +S Sbjct: 240 LKHLCFLRNQLEGSIKGITKLKNLV-TIDLGQNRLSGSIPNSIGQLKRLEKLHLAYNSMS 298 Query: 213 G 215 G Sbjct: 299 G 299 >04_01_0106 + 1102880-1105691,1105781-1105806 Length = 945 Score = 29.5 bits (63), Expect = 2.6 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Frame = +3 Query: 477 EVSELFERIISRAQLLVGQKVKLNLKPDSIENIFVIAQQ--HY--INGNVKEAANILGIL 644 +VS E I+ L GQK +LK S+ N F ++ H+ + +KEA N L L Sbjct: 79 QVSFEVEDILDEFVYLFGQKQTASLK--SLRNFFPKSKSMMHWQRLAAELKEAQNRLQNL 136 Query: 645 QNLKVQ 662 +NLKVQ Sbjct: 137 RNLKVQ 142 >02_01_0738 + 5501894-5501978,5502130-5502369,5502880-5503079, 5503653-5503827,5503923-5504038 Length = 271 Score = 28.3 bits (60), Expect = 6.0 Identities = 25/108 (23%), Positives = 50/108 (46%) Frame = +3 Query: 180 EKFKNAITQLSGLNYLDVEVKDMTSPCLLYNYAVILFHSRYYYQCVVILEKLLSSKSIKD 359 ++ K+ +L +++ D E+KD+ C +Y + F+ + C+V LL+ + + Sbjct: 119 QELKHCFQKLD-ISFTDEEIKDLFQACDIYENMGMKFNEFIVFLCLVY---LLNDPLVSE 174 Query: 360 ARLLQQIILLMLEATICRRTYDKTIEIAKNHGEPLKINNEVSELFERI 503 AR +++ L LE T D + + KN + N + + E I Sbjct: 175 AR--KRMGLGSLEPTF-ETLVDSFVFLDKNKDGYVSKNEMIQAINETI 219 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,911,664 Number of Sequences: 37544 Number of extensions: 294889 Number of successful extensions: 655 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 628 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 655 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1721314888 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -