Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0992
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104     33   0.21 
11_06_0080 - 19880319-19880957,19881800-19881948,19882266-198835...    31   0.64 
10_08_0076 + 14685364-14686468,14686521-14686540,14686614-146867...    31   0.84 
02_01_0423 - 3092863-3094959                                           31   0.84 
04_01_0106 + 1102880-1105691,1105781-1105806                           29   2.6  
02_01_0738 + 5501894-5501978,5502130-5502369,5502880-5503079,550...    28   6.0  

>12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104
          Length = 744

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
 Frame = +3

Query: 129 QHNKAVVEFMAGEMKNVEKFKNAITQLSGLNYLDVEVKDMTSPCL-----LYNYAVILFH 293
           QHN  V +F A  +K++ + +  +     L YLD E     S CL     +Y++ V+L  
Sbjct: 555 QHNAKVADFGASALKSMNESEFIMFVQGTLGYLDPE--SFISHCLTDKSDVYSFGVVLLE 612

Query: 294 SRYYYQCVVILEKLLSSKSIKDARLLQQIILLMLEATICRRTYDKTI 434
                  ++  ++ + + SI +   L    LLM +  I R   D+ I
Sbjct: 613 -------LMTRKRAIFANSINEKESLSYSFLLMFDQNIHRNMLDREI 652


>11_06_0080 -
           19880319-19880957,19881800-19881948,19882266-19883589,
           19883766-19883953,19884034-19884499
          Length = 921

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +3

Query: 501 IISRAQLLVGQKVKLNLKPDSIENIFVIAQQHYINGNVKEAANILGILQN 650
           +I  A+  + + ++   KPDS E++ V A    I+GNV     ++GIL+N
Sbjct: 709 LILEARKKLSRNLQSESKPDSNEDM-VAASSSNIDGNVPSPVEVVGILKN 757


>10_08_0076 +
           14685364-14686468,14686521-14686540,14686614-14686749,
           14687537-14687664,14687742-14687855
          Length = 500

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +3

Query: 504 ISRAQLLVGQKVKLNLKPDSIENIFVIAQQHYINGNVKEAANILGILQNL 653
           + R +L+   ++   +   ++ NI V+A QH+ +G  K   + LG L+NL
Sbjct: 286 LQRLKLICEDRLCNYIGVSTVLNILVLADQHHCDGLKKACFSFLGSLENL 335


>02_01_0423 - 3092863-3094959
          Length = 698

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +3

Query: 33  LAHQCFLKKDYTAALQHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLS 212
           L H CFL+     +++ ++ L+NLV T +         +    G++K +EK   A   +S
Sbjct: 240 LKHLCFLRNQLEGSIKGITKLKNLV-TIDLGQNRLSGSIPNSIGQLKRLEKLHLAYNSMS 298

Query: 213 G 215
           G
Sbjct: 299 G 299


>04_01_0106 + 1102880-1105691,1105781-1105806
          Length = 945

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = +3

Query: 477 EVSELFERIISRAQLLVGQKVKLNLKPDSIENIFVIAQQ--HY--INGNVKEAANILGIL 644
           +VS   E I+     L GQK   +LK  S+ N F  ++   H+  +   +KEA N L  L
Sbjct: 79  QVSFEVEDILDEFVYLFGQKQTASLK--SLRNFFPKSKSMMHWQRLAAELKEAQNRLQNL 136

Query: 645 QNLKVQ 662
           +NLKVQ
Sbjct: 137 RNLKVQ 142


>02_01_0738 +
           5501894-5501978,5502130-5502369,5502880-5503079,
           5503653-5503827,5503923-5504038
          Length = 271

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 25/108 (23%), Positives = 50/108 (46%)
 Frame = +3

Query: 180 EKFKNAITQLSGLNYLDVEVKDMTSPCLLYNYAVILFHSRYYYQCVVILEKLLSSKSIKD 359
           ++ K+   +L  +++ D E+KD+   C +Y    + F+    + C+V    LL+   + +
Sbjct: 119 QELKHCFQKLD-ISFTDEEIKDLFQACDIYENMGMKFNEFIVFLCLVY---LLNDPLVSE 174

Query: 360 ARLLQQIILLMLEATICRRTYDKTIEIAKNHGEPLKINNEVSELFERI 503
           AR  +++ L  LE T      D  + + KN    +  N  +  + E I
Sbjct: 175 AR--KRMGLGSLEPTF-ETLVDSFVFLDKNKDGYVSKNEMIQAINETI 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,911,664
Number of Sequences: 37544
Number of extensions: 294889
Number of successful extensions: 655
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)