Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0992
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12077| Best HMM Match : TPR_1 (HMM E-Value=1.3)                     32   0.49 
SB_19246| Best HMM Match : CPL (HMM E-Value=5.99994e-41)               30   2.0  
SB_33414| Best HMM Match : TSP_1 (HMM E-Value=0.00041)                 29   3.5  
SB_56393| Best HMM Match : CTF_NFI (HMM E-Value=0.75)                  29   4.6  
SB_40629| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_23199| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_12077| Best HMM Match : TPR_1 (HMM E-Value=1.3)
          Length = 123

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
 Frame = +3

Query: 21  EPAFLAHQCFLKKDYTAALQHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAI 200
           E A  AH  +  + Y  +L  LS L N +  ++ +V HNKA++++    +   ++F N +
Sbjct: 29  ELANQAHIEYEGQQYDKSLAALSKL-NEMRPNDYKVVHNKAIIQYCLTGLTRTDEFFNHL 87

Query: 201 TQL-------SGLNYLDVEVKDMTSPCLLYNYAVILFH 293
             L       SG +  + +V DM    +LYN AV+ ++
Sbjct: 88  ATLRKKIEHESGDSKDESDVLDMV--YVLYNEAVVCYN 123


>SB_19246| Best HMM Match : CPL (HMM E-Value=5.99994e-41)
          Length = 506

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 197 GIFEFFHILHLSSHKLYNGFVVLNP 123
           G+ E F  + +++ +LYNG VVLNP
Sbjct: 410 GVLEGFGSMTIATEQLYNGSVVLNP 434


>SB_33414| Best HMM Match : TSP_1 (HMM E-Value=0.00041)
          Length = 428

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
 Frame = +3

Query: 180 EKFKNAITQL--SGLNYLDVEVKDMTSPCLLYNYAVILFHSRYYYQCVVILEKLLSS-KS 350
           E+F++A+  +      +LD EV DM+   +++ Y      +RY     +  E++ S+  S
Sbjct: 310 ERFESALEPVMKETEGFLDAEVIDMSKGSIMFTY-----RARYRRTSTITSERMRSTLYS 364

Query: 351 IKDARLLQQIILLMLEATICRRTYDKTIEIAKN 449
            +D RL Q  I+ + E T  + T  K+   ++N
Sbjct: 365 ARDDRLAQLNIISIREKT-AQITVQKSTPTSEN 396


>SB_56393| Best HMM Match : CTF_NFI (HMM E-Value=0.75)
          Length = 886

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
 Frame = +3

Query: 99  NLVGTSNKR-VQHNKAVVEFMAGEMKNVEKFKNAITQLSGLNYLDVEVKDMTSPCLLYNY 275
           +L+G S++   QH + V + ++     V + K+ +  +  +N+L   V  ++    L   
Sbjct: 420 HLIGKSSEECAQHARDVCQTLSNLGFTVNEAKSQLVPMQQINFLGFAVDSVSMTLSLPTQ 479

Query: 276 AVILFHSRYYYQCVVILEKLLSSKSIKDARLLQQIILLMLEATICRRTYDKTIEIAKNH 452
            +          C  +LE    S SI+D   +  +I+    A    R + +++E+ K+H
Sbjct: 480 KI----DTIINACRGLLEN--PSPSIRDVAHVTGLIVSAFRAVKYLRLFYRSVELCKSH 532


>SB_40629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +3

Query: 489 LFERIISRAQLLVGQKVKLNLKPDSIENIFVIAQ--QHYINGNVKEAANILGILQNLKVQ 662
           L++RIIS + + +G+  K+N K D +E++F + +  Q  +  +      IL   Q ++V+
Sbjct: 49  LYQRIISGSSVELGKNYKIN-KDDEVEDLFELLKSIQEKMEFDAIAVGAILSDYQRVRVE 107


>SB_23199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 89  RLGKPCGNFE*KGSTQQSRCRVYGWRDEECGKI 187
           RLG P    + +G  + S C +Y WR +  G +
Sbjct: 81  RLGVPTVQLDAQGRARPSLCNLYNWRYKTLGNL 113


>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +3

Query: 276 AVILFHSRYYYQCVVILEKLLSSKSIKDARLLQQIIL 386
           A ++  SRYY+ C++ L K   +K+I+  R L+ +IL
Sbjct: 8   AQLMHPSRYYFACILTLNKGNIAKNIR-IRYLRPLIL 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,462,526
Number of Sequences: 59808
Number of extensions: 377280
Number of successful extensions: 764
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)