Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0992
         (680 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed...    30   2.5  
AY070614-1|AAL48085.1|  605|Drosophila melanogaster RE71584p pro...    29   5.9  
AE014297-1557|AAF54839.1|  635|Drosophila melanogaster CG18616-P...    29   5.9  
AY075192-1|AAL68061.1|  461|Drosophila melanogaster AT13460p pro...    29   7.8  
AE014297-2768|AAF55744.1|  461|Drosophila melanogaster CG17199-P...    29   7.8  

>AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed
           DNA polymerase protein.
          Length = 1013

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
 Frame = +3

Query: 39  HQCFLKKDYTAALQHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLSG- 215
           ++CF+K D+ +  + +SD+      S  R +     VEF   + +  EK +N +      
Sbjct: 404 YRCFIK-DFASIARPISDILKGENGSVSRHRSRSIQVEFSEAQQRAFEKLRNILASEDVI 462

Query: 216 LNYLDV-EVKDMTSPCLLYNYAVILFHSRYYYQCVVILEKLLSSKSIKDARLLQQIILLM 392
           L Y D  +  D+T+    Y    +L       + + ++ + LS + +  A   ++++ ++
Sbjct: 463 LRYPDYKKAFDLTTDASAYGIGAVLSQEG---RPITMISRTLSDREVNYATNERELLAIV 519


>AY070614-1|AAL48085.1|  605|Drosophila melanogaster RE71584p
           protein.
          Length = 605

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 36  AHQCFLKKDYTAALQHLSDLENLVGTSNKRVQHNKAVVEF 155
           AH+ F   ++   L+ L +LE    +S   ++HN+AVV +
Sbjct: 24  AHEQFNNSEFDRCLELLQELETRGESSGPVLRHNRAVVSY 63


>AE014297-1557|AAF54839.1|  635|Drosophila melanogaster CG18616-PA
           protein.
          Length = 635

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 36  AHQCFLKKDYTAALQHLSDLENLVGTSNKRVQHNKAVVEF 155
           AH+ F   ++   L+ L +LE    +S   ++HN+AVV +
Sbjct: 24  AHEQFNNSEFDRCLELLQELETRGESSGPVLRHNRAVVSY 63


>AY075192-1|AAL68061.1|  461|Drosophila melanogaster AT13460p
           protein.
          Length = 461

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 57  KDYTAALQHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLSGL 218
           K+ +  + H    +N    S++ + HN   V  M G  K  E FKNA    SGL
Sbjct: 43  KESSIGIDHTEVPQNTPAGSDQ-MWHNIKRVLLMCGGQKQPEGFKNATKDFSGL 95


>AE014297-2768|AAF55744.1|  461|Drosophila melanogaster CG17199-PA
           protein.
          Length = 461

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 57  KDYTAALQHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLSGL 218
           K+ +  + H    +N    S++ + HN   V  M G  K  E FKNA    SGL
Sbjct: 43  KESSIGIDHTEVPQNTPAGSDQ-MWHNIKRVLLMCGGQKQPEGFKNATKDFSGL 95


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,824,146
Number of Sequences: 53049
Number of extensions: 534686
Number of successful extensions: 1211
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2971922400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)