Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0992
(680 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83318-6|CAI79196.1| 161|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z49908-1|CAA90093.1| 816|Caenorhabditis elegans Hypothetical pr... 29 3.1
DQ342049-1|ABC69941.1| 830|Caenorhabditis elegans STIP protein. 29 3.1
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 4.1
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 29 4.1
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 29 4.1
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF047655-7|AAC04404.1| 561|Caenorhabditis elegans Hypothetical ... 28 5.4
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ... 28 5.4
Z79605-6|CAB01906.3| 323|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z93379-6|CAB07591.2| 1108|Caenorhabditis elegans Hypothetical pr... 27 9.4
U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula (ubiq... 27 9.4
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ... 27 9.4
AF003150-4|AAB54217.1| 381|Caenorhabditis elegans Hypothetical ... 27 9.4
>Z83318-6|CAI79196.1| 161|Caenorhabditis elegans Hypothetical
protein F55B11.6 protein.
Length = 161
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 81 HLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLSGL 218
H L L G ++ VQH+ A F A ++ KF+ + ++ GL
Sbjct: 91 HEHILTGLKGIESQLVQHHGASSSFQAAPHHSINKFERILAKIEGL 136
>Z49908-1|CAA90093.1| 816|Caenorhabditis elegans Hypothetical
protein C07E3.1a protein.
Length = 816
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 57 KDYTAALQH-LSDLENLVGTSNKRVQHNKAVVEFMAGEMKN 176
KD T AL++ L ++ +GT + QH K V E + G N
Sbjct: 337 KDQTTALEYDLQQVQKSLGTEEQEAQHIKDVYELIDGFSSN 377
>DQ342049-1|ABC69941.1| 830|Caenorhabditis elegans STIP protein.
Length = 830
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 57 KDYTAALQH-LSDLENLVGTSNKRVQHNKAVVEFMAGEMKN 176
KD T AL++ L ++ +GT + QH K V E + G N
Sbjct: 351 KDQTTALEYDLQQVQKSLGTEEQEAQHIKDVYELIDGFSSN 391
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 51 LKKDYTAAL-QHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLSGLNYL 227
LK D +A +HLSDL++ K V++ K+V + + ++ N+E K L+ N L
Sbjct: 1139 LKSDISALHDKHLSDLDDEKEQYGKAVENLKSVEDDLRDKLNNLE--KQLADSLNRENEL 1196
Query: 228 DVEVKD 245
+ E +D
Sbjct: 1197 EREKRD 1202
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 51 LKKDYTAAL-QHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLSGLNYL 227
LK D +A +HLSDL++ K V++ K+V + + ++ N+E K L+ N L
Sbjct: 1212 LKSDISALHDKHLSDLDDEKEQYGKAVENLKSVEDDLRDKLNNLE--KQLADSLNRENEL 1269
Query: 228 DVEVKD 245
+ E +D
Sbjct: 1270 EREKRD 1275
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 51 LKKDYTAAL-QHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLSGLNYL 227
LK D +A +HLSDL++ K V++ K+V + + ++ N+E K L+ N L
Sbjct: 1212 LKSDISALHDKHLSDLDDEKEQYGKAVENLKSVEDDLRDKLNNLE--KQLADSLNRENEL 1269
Query: 228 DVEVKD 245
+ E +D
Sbjct: 1270 EREKRD 1275
>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
protein C01G5.4 protein.
Length = 1079
Score = 28.7 bits (61), Expect = 4.1
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 5/142 (3%)
Frame = +3
Query: 48 FLKKDYTAA-LQHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLSGLNY 224
F K D AA + L D+ N + S + + ++E M++ + +N + +Y
Sbjct: 197 FYKLDKIAAWTRKLKDIPNDLKASTELDELESKILELDQIRMES-DGVQNVLESSKLTDY 255
Query: 225 LDVEVKDMTSPCLLYNYAVILFHSRYYYQCVVILEKLLSSKSIKDA----RLLQQIILLM 392
VK++ + YN+ + +R ++ LEK+LSS + K+ R L M
Sbjct: 256 F-ATVKNVKNNLEKYNFKLFSDANREISTVLITLEKILSSATAKELWNKYRSLPSQCKKM 314
Query: 393 LEATICRRTYDKTIEIAKNHGE 458
+ A + DK I K +GE
Sbjct: 315 MAAIEAVKKIDKK-SIEKEYGE 335
>AF047655-7|AAC04404.1| 561|Caenorhabditis elegans Hypothetical
protein C17B7.10 protein.
Length = 561
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/67 (22%), Positives = 32/67 (47%)
Frame = +3
Query: 39 HQCFLKKDYTAALQHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLSGL 218
++ F+ +L+ L ++ NL + + ++A + + EKFK + +L GL
Sbjct: 135 NETFVNNGTYTSLEDLVNISNLTQWCIEMEVLSLGYYNYIADGLNSSEKFKEVMKRLDGL 194
Query: 219 NYLDVEV 239
N +V +
Sbjct: 195 NSTNVNI 201
>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
protein H06I04.5 protein.
Length = 1138
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 60 DYTAALQHLSDLENLVGTSNKRVQHNKAVVEFMAGEMK 173
DY L+ LS L+N+V T+ VQ KA +E M K
Sbjct: 397 DYVEKLKDLSSLKNIVETTTDDVQ-GKAAIEKMKANPK 433
>Z79605-6|CAB01906.3| 323|Caenorhabditis elegans Hypothetical
protein ZK678.4 protein.
Length = 323
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 674 FIS*LYFKVL*YPQYISCFLYITIDVM 594
FIS + F L P + SCF+Y +D++
Sbjct: 112 FISLMVFASLLIPLFSSCFIYFRLDIL 138
>Z93379-6|CAB07591.2| 1108|Caenorhabditis elegans Hypothetical
protein F21H7.9 protein.
Length = 1108
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 411 RRTYDKTIEIAKNHGEPLKINNEVSELFERIISR 512
R Y K + I N GEP I + + ++ISR
Sbjct: 294 RDAYGKVLYICDNMGEPTTITTQYTNFTSQVISR 327
>U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula
(ubiquitin activating)homolog protein 1 protein.
Length = 541
Score = 27.5 bits (58), Expect = 9.4
Identities = 25/108 (23%), Positives = 42/108 (38%)
Frame = +3
Query: 180 EKFKNAITQLSGLNYLDVEVKDMTSPCLLYNYAVILFHSRYYYQCVVILEKLLSSKSIKD 359
E + +T+ + L L + DMTS Y LFH + E L ++ ++
Sbjct: 305 EALRRFVTENNNLLPLRGTLPDMTSDSSRYTRLATLFHEKALSDA---QEVLRLTREVEK 361
Query: 360 ARLLQQIILLMLEATICRRTYDKTIEIAKNHGEPLKINNEVSELFERI 503
R + +I +C R I +G+ L N E + E+I
Sbjct: 362 ERGVGDVI----SDDVCYRFCKNADRIRVQYGDVLDYNEETKAIVEKI 405
>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
protein Y113G7C.1 protein.
Length = 1494
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +3
Query: 15 RDEPAFLAHQCFLKKDYTAALQHLSDLENLVGTSNKRVQHNKAVVEF----MAGEMKNVE 182
+DE + ++ F +DY + ++ENL G++ K EF +K ++
Sbjct: 247 KDETTRMENRAFEWEDYRRKSESFGEVENLPGSTEYFDAITKFQSEFNFTLFNATLKKID 306
Query: 183 KFKNAITQLSGLNY 224
F +IT L NY
Sbjct: 307 AFGGSITFLLNNNY 320
>AF003150-4|AAB54217.1| 381|Caenorhabditis elegans Hypothetical
protein T05E7.5 protein.
Length = 381
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 438 IAKNHGEPLKINNEVSELFERIISR-AQLLVGQKVKLNLKPDSIENIFVIAQQ 593
I KN E + EV + I R + + +G + +LN++ DS E F AQQ
Sbjct: 192 IKKNFEEYKERMTEVEKNLNEFIKRQSAICMGVRYELNMEKDSRERYFKEAQQ 244
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,759,325
Number of Sequences: 27780
Number of extensions: 294648
Number of successful extensions: 687
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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