Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0992
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12400.1 68418.m01458 PHD finger transcription factor, putati...    29   2.2  
At1g02950.2 68414.m00263 glutathione S-transferase, putative sim...    29   2.8  
At1g02950.1 68414.m00262 glutathione S-transferase, putative sim...    29   2.8  
At5g35430.1 68418.m04213 expressed protein                             29   3.8  
At1g74120.1 68414.m08584 mitochondrial transcription termination...    28   5.0  
At1g13910.1 68414.m01632 leucine-rich repeat family protein cont...    28   6.6  
At3g19600.1 68416.m02485 NLI interacting factor (NIF) family pro...    27   8.7  
At1g51280.1 68414.m05767 disease resistance protein (TIR class),...    27   8.7  

>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
            similarity to predicted proteins, Arabidopsis thaliana
          Length = 1595

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 327  EKLLSSKSIK-DARLLQQIILLMLEATICRRTYDKTIEIAKNHGEPLKINNEVS 485
            +K+++SK ++   R L+ +I L  E+ +   +  + +E  +  G P K+  E+S
Sbjct: 1428 KKVVASKPLRRSGRQLKHVIRLQDESKVPEGSKKRKLETKRGRGRPKKVKQEIS 1481


>At1g02950.2 68414.m00263 glutathione S-transferase, putative
           similar to glutathione-S-transferase GI:169887 from
           [Silene vulgaris]
          Length = 245

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +3

Query: 9   KDRDEPAFLAHQCFLKKDYTAALQHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKF 188
           K  +E  FLA   F   D    L HL +++ L+GT  K++   ++ V     E+ + E +
Sbjct: 174 KRLEESRFLACNSFTLVD----LHHLPNIQYLLGTPTKKLFEKRSKVRKWVDEITSREAW 229

Query: 189 KNAITQ 206
           K A  Q
Sbjct: 230 KMACDQ 235


>At1g02950.1 68414.m00262 glutathione S-transferase, putative
           similar to glutathione-S-transferase GI:169887 from
           [Silene vulgaris]
          Length = 243

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +3

Query: 9   KDRDEPAFLAHQCFLKKDYTAALQHLSDLENLVGTSNKRVQHNKAVVEFMAGEMKNVEKF 188
           K  +E  FLA   F   D    L HL +++ L+GT  K++   ++ V     E+ + E +
Sbjct: 172 KRLEESRFLACNSFTLVD----LHHLPNIQYLLGTPTKKLFEKRSKVRKWVDEITSREAW 227

Query: 189 KNAITQ 206
           K A  Q
Sbjct: 228 KMACDQ 233


>At5g35430.1 68418.m04213 expressed protein
          Length = 786

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 270 NYAVILFHSRYYYQCVVILEKLLSSKSIKDARLLQQIILLMLEATI-CR 413
           N AV  FH  +Y +   ILE L  +    D  +  QI  L+L+ ++ CR
Sbjct: 130 NIAVTWFHLYHYSKSFSILEPLFQNIQRLDETIALQICFLLLDISLACR 178


>At1g74120.1 68414.m08584 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 445

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
 Frame = +3

Query: 459 PLKINNEVSELFERIIS-------RAQLLVGQKV-KLNLKPDSIENIFVIAQQHYINGNV 614
           P+ + N++  L  RI++       R ++L+   + +    P S+++ F+    H +N ++
Sbjct: 15  PITLFNQIRSLSSRILTPINQSHYRKRILLANLLQRYGFPPSSLQH-FLSRNNHLLNSDL 73

Query: 615 KEAANILGILQNLKV 659
            E    LGIL +LK+
Sbjct: 74  VETEISLGILLSLKI 88


>At1g13910.1 68414.m01632 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-0A
           [Lycopersicon esculentum] gi|3894385|gb|AAC78592
          Length = 330

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 108 GTSNKRVQHNKAVVEFMAGEMKNVEKFKNAITQLSGLNYLDVEVKDMTSP 257
           G +  +V   + VV+     M  V  F  AIT+L  L  LD+    +T P
Sbjct: 67  GVTCSKVGDYRVVVKLEVYSMSIVGNFPKAITKLLDLTVLDMHNNKLTGP 116


>At3g19600.1 68416.m02485 NLI interacting factor (NIF) family
           protein low similarity to CTD phosphatase [Xenopus
           laevis] GI:13487713; contains Pfam profile PF03031: NLI
           interacting factor
          Length = 601

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +3

Query: 405 ICRRTYDKTIEIAKNHGEPLKINNEVSELFERIISRAQLLVGQKVKLNLKPD 560
           +C+ T DKTIE     G  L +++E   L +R+I++   L  +K+ L L  D
Sbjct: 47  VCKSTVDKTIEGRVFDG--LHLSSEALALTKRLITKFSCLNMKKLHLVLDLD 96


>At1g51280.1 68414.m05767 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 240

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 276 AVILFHSRYYYQCVVILEKLLSSKSIKDARLLQQIILLMLEATICRR 416
           AV +F  RY   C  + E +   + ++  +L+   +   L AT C+R
Sbjct: 82  AVAIFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKR 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,624,139
Number of Sequences: 28952
Number of extensions: 263149
Number of successful extensions: 661
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)