Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0991
         (398 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5C0F6 Cluster: Putative uncharacterized protein; n=1; ...   107   6e-23
UniRef50_Q59KL1 Cluster: Putative uncharacterized protein; n=1; ...    84   1e-15
UniRef50_A7RNM9 Cluster: Predicted protein; n=4; Eumetazoa|Rep: ...    73   2e-12
UniRef50_UPI0000DA4670 Cluster: PREDICTED: hypothetical protein;...    69   3e-11
UniRef50_UPI0000F2E2E1 Cluster: PREDICTED: similar to SH2-B homo...    67   1e-10
UniRef50_A3LSK4 Cluster: Predicted protein; n=4; Ascomycota|Rep:...    66   2e-10
UniRef50_Q6NKM5 Cluster: LD48059p; n=1; Drosophila melanogaster|...    64   1e-09
UniRef50_Q652R5 Cluster: Putative uncharacterized protein P0603C...    56   3e-07
UniRef50_UPI0000F2EBE7 Cluster: PREDICTED: similar to COL5A2 pro...    49   3e-05
UniRef50_Q7RN94 Cluster: Putative uncharacterized protein PY0192...    42   0.003
UniRef50_Q7RAD4 Cluster: Putative uncharacterized protein PY0656...    34   0.89 
UniRef50_Q0M3P5 Cluster: Aminotransferase class-III:Shikimate/qu...    32   4.8  
UniRef50_Q9SCJ9 Cluster: Ubiquitin carboxyl-terminal hydrolase 2...    31   8.3  

>UniRef50_Q5C0F6 Cluster: Putative uncharacterized protein; n=1;
           Schistosoma japonicum|Rep: Putative uncharacterized
           protein - Schistosoma japonicum (Blood fluke)
          Length = 102

 Score =  107 bits (258), Expect = 6e-23
 Identities = 52/77 (67%), Positives = 59/77 (76%)
 Frame = +3

Query: 132 SHSRGVSFPISE*RRALSTNAGTRKMVNYAWSGRSQGKP*WRTVAILTCKSIVGTGYRGE 311
           +H R VS P +  R + S    TRKMVNYAW+GRSQ K  WR+VA+LTCKS+V  GYRGE
Sbjct: 27  AHHRPVS-PAAPGRWSTSARVRTRKMVNYAWAGRSQRKLWWRSVAVLTCKSVVRPGYRGE 85

Query: 312 RLIEPSSSWFRPKFPSG 362
           RLIEPSSSWF PKFPSG
Sbjct: 86  RLIEPSSSWFPPKFPSG 102


>UniRef50_Q59KL1 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 108

 Score = 83.8 bits (198), Expect = 1e-15
 Identities = 40/49 (81%), Positives = 41/49 (83%)
 Frame = -3

Query: 327 MVRLVFRPYTQFRRSICTSESLRSSIRVSPDFDLTRHSSPSFGSQHLCS 181
           MVRLVFRPYTQ RRSICTSE LR+S RVS  F L RHSSPSFGSQ LCS
Sbjct: 1   MVRLVFRPYTQIRRSICTSEPLRASTRVSSGFTLFRHSSPSFGSQQLCS 49


>UniRef50_A7RNM9 Cluster: Predicted protein; n=4; Eumetazoa|Rep:
           Predicted protein - Nematostella vectensis
          Length = 53

 Score = 72.9 bits (171), Expect = 2e-12
 Identities = 33/44 (75%), Positives = 34/44 (77%)
 Frame = -1

Query: 314 SFAPIPSSDDRFARQNRYGPPSGFPLTST*PGIVHHLSGPSICA 183
           SFAPIP  DDRFARQNRY PP  FPL S   GIVHHLSGP+ CA
Sbjct: 1   SFAPIPKFDDRFARQNRYEPPPEFPLASPYSGIVHHLSGPNRCA 44


>UniRef50_UPI0000DA4670 Cluster: PREDICTED: hypothetical protein;
           n=1; Rattus norvegicus|Rep: PREDICTED: hypothetical
           protein - Rattus norvegicus
          Length = 440

 Score = 68.9 bits (161), Expect = 3e-11
 Identities = 36/61 (59%), Positives = 40/61 (65%)
 Frame = -1

Query: 302 IPSSDDRFARQNRYGPPSGFPLTST*PGIVHHLSGPSICAQSAPSFTDWKRDASGVRKSR 123
           +  SDDRFARQ+RYGPP  FPL S  PGIVHHLSGP+  A+ AP      RD   VR  R
Sbjct: 115 LTGSDDRFARQDRYGPPPEFPLASPCPGIVHHLSGPNAYAR-APPPRRGGRDGPVVRPRR 173

Query: 122 T 120
           T
Sbjct: 174 T 174


>UniRef50_UPI0000F2E2E1 Cluster: PREDICTED: similar to SH2-B
           homolog,; n=2; Mammalia|Rep: PREDICTED: similar to SH2-B
           homolog, - Monodelphis domestica
          Length = 394

 Score = 67.3 bits (157), Expect = 1e-10
 Identities = 39/69 (56%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
 Frame = -1

Query: 368 QLS*GKLRTEPATRWF-D*SFAPIPS--SDDRFARQNRYGPPSGFPLTST*PGIVHHLSG 198
           QLS  KL     TRW  D    P  +  SDDRFARQ+RYGPP  FPL S  PGIVHHLSG
Sbjct: 28  QLS-SKLSYSGPTRWVPDSRVLPDTTMGSDDRFARQDRYGPPPEFPLASPCPGIVHHLSG 86

Query: 197 PSICAQSAP 171
           P+  A + P
Sbjct: 87  PNTHAHAPP 95


>UniRef50_A3LSK4 Cluster: Predicted protein; n=4; Ascomycota|Rep:
           Predicted protein - Pichia stipitis (Yeast)
          Length = 81

 Score = 66.5 bits (155), Expect = 2e-10
 Identities = 30/41 (73%), Positives = 31/41 (75%)
 Frame = -1

Query: 314 SFAPIPSSDDRFARQNRYGPPSGFPLTST*PGIVHHLSGPS 192
           SFAPIP  DDRFARQNRY PP  FP  S   GIVHHLSGP+
Sbjct: 1   SFAPIPKFDDRFARQNRYEPPPEFPSASPYSGIVHHLSGPN 41


>UniRef50_Q6NKM5 Cluster: LD48059p; n=1; Drosophila
           melanogaster|Rep: LD48059p - Drosophila melanogaster
           (Fruit fly)
          Length = 46

 Score = 63.7 bits (148), Expect = 1e-09
 Identities = 29/38 (76%), Positives = 32/38 (84%)
 Frame = +2

Query: 182 EHKCWDPKDGELCLVRSKSGETLMEDRSDSDVQIDRRN 295
           EH C DPKDGEL L+R KSGETLMEDR+ SDVQID +N
Sbjct: 9   EHICCDPKDGELYLIRLKSGETLMEDRNSSDVQIDCQN 46


>UniRef50_Q652R5 Cluster: Putative uncharacterized protein
           P0603C10.50; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0603C10.50 - Oryza sativa subsp. japonica (Rice)
          Length = 248

 Score = 55.6 bits (128), Expect = 3e-07
 Identities = 24/39 (61%), Positives = 27/39 (69%)
 Frame = -1

Query: 305 PIPSSDDRFARQNRYGPPSGFPLTST*PGIVHHLSGPSI 189
           PIP SD RF RQ R+ PP  FPLTS    I+HHLSGP +
Sbjct: 38  PIPKSDKRFVRQYRFEPPLDFPLTSPRSSIIHHLSGPDM 76



 Score = 40.7 bits (91), Expect = 0.010
 Identities = 17/21 (80%), Positives = 18/21 (85%)
 Frame = -2

Query: 364 YPEGNFGRNQLLDGSISLSPL 302
           YPEGNFG NQLLDGSI L P+
Sbjct: 19  YPEGNFGGNQLLDGSIGLIPI 39


>UniRef50_UPI0000F2EBE7 Cluster: PREDICTED: similar to COL5A2
           protein; n=9; Monodelphis domestica|Rep: PREDICTED:
           similar to COL5A2 protein - Monodelphis domestica
          Length = 774

 Score = 49.2 bits (112), Expect = 3e-05
 Identities = 21/27 (77%), Positives = 22/27 (81%)
 Frame = -1

Query: 290 DDRFARQNRYGPPSGFPLTST*PGIVH 210
           DDRFARQ+RYGPP  FPL S  PGIVH
Sbjct: 20  DDRFARQDRYGPPPEFPLASPCPGIVH 46


>UniRef50_Q7RN94 Cluster: Putative uncharacterized protein PY01927;
           n=2; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY01927 - Plasmodium yoelii yoelii
          Length = 193

 Score = 42.3 bits (95), Expect = 0.003
 Identities = 22/45 (48%), Positives = 28/45 (62%)
 Frame = -2

Query: 352 NFGRNQLLDGSISLSPLYPVPTIDLHVRIATVLHQGFP*LRPDQA 218
           +F  NQL+  SISLSPL  +   DLHV I ++LHQ F  L+   A
Sbjct: 149 SFENNQLIGFSISLSPLNVIEMNDLHVSINSILHQAFTRLQSHHA 193


>UniRef50_Q7RAD4 Cluster: Putative uncharacterized protein PY06566;
           n=3; cellular organisms|Rep: Putative uncharacterized
           protein PY06566 - Plasmodium yoelii yoelii
          Length = 114

 Score = 34.3 bits (75), Expect = 0.89
 Identities = 17/30 (56%), Positives = 20/30 (66%)
 Frame = -2

Query: 361 PEGNFGRNQLLDGSISLSPLYPVPTIDLHV 272
           PE +F  NQL+  SISLSPL  +   DLHV
Sbjct: 45  PERSFENNQLIGFSISLSPLNVIEMNDLHV 74


>UniRef50_Q0M3P5 Cluster: Aminotransferase
           class-III:Shikimate/quinate 5-dehydrogenase; n=1;
           Caulobacter sp. K31|Rep: Aminotransferase
           class-III:Shikimate/quinate 5-dehydrogenase -
           Caulobacter sp. K31
          Length = 957

 Score = 31.9 bits (69), Expect = 4.8
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = -2

Query: 277 HVRIATVLHQGFP*LRPDQA*FTIFRVPAFVLRARLHSLIGNETPR 140
           H  IA+ LH G    RP  A  +I R PA +L  RL +L+G  T R
Sbjct: 81  HPEIASALHAGLTAQRPMFAQASI-RAPAALLAERLSALVGRTTGR 125


>UniRef50_Q9SCJ9 Cluster: Ubiquitin carboxyl-terminal hydrolase 26;
            n=8; Magnoliophyta|Rep: Ubiquitin carboxyl-terminal
            hydrolase 26 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 1067

 Score = 31.1 bits (67), Expect = 8.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 215  LCLVRSKSGETLMEDRSDSDVQIDRRNWV*GRKTN 319
            +C VR K     M + SDS  ++DRR     R+TN
Sbjct: 928  VCFVRGKGAPKAMLEASDSSFEVDRRTSKRSRRTN 962


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 375,495,290
Number of Sequences: 1657284
Number of extensions: 7431103
Number of successful extensions: 16232
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16230
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16926675320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)