Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0991
         (398 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   2.6  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   5.9  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   5.9  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 8/38 (21%), Positives = 18/38 (47%)
 Frame = -2

Query: 151 ETPRECENHERSSIISSSLNERRAFAFTFVTPFSLMLK 38
           E   +  NHE   +I   + ++      +VTP + +++
Sbjct: 762 ENVEQTLNHEIKKVIPGRITQKSCSTKRYVTPVNTLVR 799


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 81  ARRSFREDEIIELRS*FSHSRGVSFP 158
           AR ++   +++EL   F H + +S P
Sbjct: 91  ARTAYTSAQLVELEREFHHGKYLSRP 116


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 81  ARRSFREDEIIELRS*FSHSRGVSFP 158
           AR ++   +++EL   F H + +S P
Sbjct: 82  ARTAYTSAQLVELEREFHHGKYLSRP 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,919
Number of Sequences: 336
Number of extensions: 1644
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)