Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0991
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   0.81 
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   2.5  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    25   4.3  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   4.3  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   4.3  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    24   7.6  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    24   7.6  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    24   7.6  

>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 27.5 bits (58), Expect = 0.81
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 194 SICAQSAPSFTDW-KRDASGVRKSRT*LDNFILPERTSSVRLHFRY 60
           ++C + +  + DW +R +SG+++  T  +  I  ER   +  HF Y
Sbjct: 861 ALCDKMSEIWADWVQRTSSGIQEEDTIPNEMIDEERMLDLEKHFMY 906


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 124 ERSSIISSSLNERRAFAFTFVT 59
           E SS++  S N+ RAFA  F+T
Sbjct: 273 EPSSLVGDSANKYRAFAKNFIT 294


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 199 VPAFVLRARLHSLIGNETPRECENH 125
           VP FV    LH   G++TP  C  H
Sbjct: 622 VPGFVSSPNLHLAGGSDTPIYCIEH 646


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 20/79 (25%), Positives = 35/79 (44%)
 Frame = +3

Query: 84  RRSFREDEIIELRS*FSHSRGVSFPISE*RRALSTNAGTRKMVNYAWSGRSQGKP*WRTV 263
           RR+   D  + L +  SH   ++    + R  L+ + G  +++N   +GR Q      T+
Sbjct: 25  RRALDCDSEMSLMNSLSHLVYLTSTSPKIREILTMDGGLMRLMNILRAGRGQTFA-RMTI 83

Query: 264 AILTCKSIVGTGYRGERLI 320
             L  + +V  G RG   I
Sbjct: 84  WQLALQCVVNVGIRGSEAI 102


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 285 SICTSESLRSSIRVSPDFDLTRHSSPSFGSQHLCS 181
           S  TS S ++SI  S   + + HSSPSF  + L S
Sbjct: 460 SPATSPSNQASIHASFTKESSTHSSPSFTLESLFS 494


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 64  RK*RRTLDVRSGRMKLSSYVRDFR--TPEASRFQSVN 168
           RK RRT D + G +  ++   DFR   P+  R + +N
Sbjct: 114 RKVRRTYDTKDGFVAWNTLDDDFRPIVPDQERSRKIN 150


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 183 STNAGTRKMVNYAWSGRSQGKP*W 254
           STN G   + NY  +GR +G+  W
Sbjct: 378 STNTGFTVLGNYQTAGRGRGQNMW 401


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 6   SMCASH*VL*IFNIKLKGVTKVKANARRSFREDEIIELRS 125
           S+C SH +  +   KLK +T    N R      E+++LRS
Sbjct: 743 SVCVSHCIAKLQKTKLKSLTDFSVNPR-----VEVVQLRS 777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,536,228
Number of Sequences: 5004
Number of extensions: 30023
Number of successful extensions: 64
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)