Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0991
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377...    28   3.1  
04_03_0897 - 20646750-20646918,20647927-20648038,20649650-206501...    28   3.1  
11_06_0661 - 26009838-26010950,26011302-26011802                       27   5.5  
07_01_1163 - 11011362-11011760,11011803-11011847,11011880-110120...    27   5.5  
06_01_0750 + 5624983-5625173,5626229-5626291,5626421-5626967,562...    27   5.5  
04_04_0646 + 26926827-26926993,26927246-26927336                       27   7.2  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    27   7.2  

>11_01_0489 +
           3776563-3776692,3776995-3777073,3777532-3777840,
           3778828-3778898,3778975-3779213,3779306-3779383,
           3779734-3780156,3780416-3780661,3780886-3780978,
           3781480-3781527
          Length = 571

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 279 KSIVGTGYRGERLIEPSSSWFRPKFPSG 362
           + + GTG      + PSS+WF P+  SG
Sbjct: 12  RCVFGTGPLPPASLSPSSAWFDPELSSG 39


>04_03_0897 -
           20646750-20646918,20647927-20648038,20649650-20650108,
           20650237-20650330,20650449-20650525,20650637-20650688,
           20650770-20650927,20651191-20651281,20651465-20652529
          Length = 758

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +2

Query: 206 DGELCLVRSKSGETLMEDRSDSDVQIDRRNWV*GRKT 316
           DG+  +V + SGE    D+S  ++Q+D+  ++ G+K+
Sbjct: 436 DGKGFIVGTTSGECRFYDQSGENIQLDKELFMQGKKS 472


>11_06_0661 - 26009838-26010950,26011302-26011802
          Length = 537

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 212 HHLSGPSICAQSAPSFTDWK 153
           HHL GP+  + S+P    WK
Sbjct: 297 HHLHGPTSSSSSSPVMASWK 316


>07_01_1163 -
           11011362-11011760,11011803-11011847,11011880-11012014,
           11012101-11012994
          Length = 490

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 20/82 (24%), Positives = 35/82 (42%)
 Frame = -2

Query: 316 SLSPLYPVPTIDLHVRIATVLHQGFP*LRPDQA*FTIFRVPAFVLRARLHSLIGNETPRE 137
           S  PL+P+  ++LH+R   + +  +   RPD      F + A VLR        N   + 
Sbjct: 370 SYDPLHPIECMELHLRKVVIRY--YEGKRPDVDFAKFFVLNAKVLREMDFCSPSNRNLKW 427

Query: 136 CENHERSSIISSSLNERRAFAF 71
            +N  R   + +  ++   F F
Sbjct: 428 QDNQHRRLSLENKASQVAQFTF 449


>06_01_0750 +
           5624983-5625173,5626229-5626291,5626421-5626967,
           5627075-5627226,5627317-5627533
          Length = 389

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 263 YGPPSGFPLTST*PGIV-HHLSGPSICAQSAPSFTDW 156
           +GP   FP +S+  G   HH+ G +  A +A S + W
Sbjct: 156 HGPVVQFPWSSSASGSAGHHVDGAAAAAATASSASSW 192


>04_04_0646 + 26926827-26926993,26927246-26927336
          Length = 85

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 209 GELCLVRSKSGETLMEDRSDSDV 277
           GELC+   + GE L E R D DV
Sbjct: 21  GELCMDERRRGEELEEVRFDGDV 43


>04_03_0018 -
           9434088-9434141,9434211-9434282,9434968-9435062,
           9435445-9435526,9435610-9435660,9435749-9435829,
           9435965-9436006,9436117-9436215,9438130-9438201,
           9438557-9438680,9438850-9439723,9440274-9440456,
           9440941-9442741,9442825-9443049,9443117-9443814,
           9444519-9444591
          Length = 1541

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -1

Query: 302 IPSSDDRFARQNRYGPPSGFPLTST*PGIVHHLSGPSI 189
           IP S  R    + YGPP   P TS     V  L  PS+
Sbjct: 761 IPCSSGRDDFASSYGPPPNIPCTSLRTSKVSSLVHPSL 798


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,169,142
Number of Sequences: 37544
Number of extensions: 208475
Number of successful extensions: 421
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)