BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0991 (398 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 1e-05 SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 1e-04 SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.086 SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11 SB_36629| Best HMM Match : Fer2 (HMM E-Value=0.0041) 30 0.60 SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28) 27 4.3 SB_32283| Best HMM Match : Homeobox (HMM E-Value=4.5e-20) 27 7.4 SB_49586| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4 SB_48583| Best HMM Match : HIM (HMM E-Value=7.3) 26 9.8 SB_44333| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.8 >SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 38 Score = 46.0 bits (104), Expect = 1e-05 Identities = 20/29 (68%), Positives = 21/29 (72%) Frame = -1 Query: 269 NRYGPPSGFPLTST*PGIVHHLSGPSICA 183 NRY PP FPL S GIVHHLSGP+ CA Sbjct: 1 NRYEPPPEFPLASPYSGIVHHLSGPNRCA 29 >SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 112 Score = 42.7 bits (96), Expect = 1e-04 Identities = 21/30 (70%), Positives = 23/30 (76%) Frame = -3 Query: 270 ESLRSSIRVSPDFDLTRHSSPSFGSQHLCS 181 ESLR+S RVS F L RHSSPSFGSQ + S Sbjct: 35 ESLRASTRVSSGFTLFRHSSPSFGSQQMRS 64 >SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 91 Score = 33.1 bits (72), Expect = 0.086 Identities = 14/21 (66%), Positives = 14/21 (66%) Frame = -1 Query: 269 NRYGPPSGFPLTST*PGIVHH 207 NRY PP FPL S GIVHH Sbjct: 1 NRYEPPPEFPLASPYSGIVHH 21 >SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 178 Score = 32.7 bits (71), Expect = 0.11 Identities = 15/17 (88%), Positives = 15/17 (88%) Frame = -2 Query: 319 ISLSPLYPVPTIDLHVR 269 ISLSPLYP TIDLHVR Sbjct: 38 ISLSPLYPNLTIDLHVR 54 >SB_36629| Best HMM Match : Fer2 (HMM E-Value=0.0041) Length = 128 Score = 30.3 bits (65), Expect = 0.60 Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 4/54 (7%) Frame = +2 Query: 137 LPRRLVSNQ*MKARSEHKC----WDPKDGELCLVRSKSGETLMEDRSDSDVQID 286 L RR VSN + +++H+ + +DG+ V++K G++L++ D+DV ++ Sbjct: 29 LARRYVSNGKEQTKAKHETVSITFVDRDGDRQTVKAKVGDSLLDVAKDNDVDLE 82 >SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28) Length = 307 Score = 27.5 bits (58), Expect = 4.3 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -1 Query: 215 VHHLSGPSICAQSAPSFTDWKRDASGVRKSR 123 V L+ S+C Q APSF + K+ AS VR ++ Sbjct: 183 VRKLAKISLCDQYAPSFKEKKKMASEVRVAK 213 >SB_32283| Best HMM Match : Homeobox (HMM E-Value=4.5e-20) Length = 398 Score = 26.6 bits (56), Expect = 7.4 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = -3 Query: 291 RRSICTSESLRSSIRVSPDFDLTRHSSPSFGSQH--LCSERAF 169 R S C+S R S+ SPD TR ++ SF ++H C +R F Sbjct: 220 RSSPCSSPGTRPSLCSSPD---TRTTTRSFFTEHQVACLQRVF 259 >SB_49586| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 247 Score = 26.6 bits (56), Expect = 7.4 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = -2 Query: 181 RARLHSLIGNETPRECENHERSSIISSSLNER 86 R RL SLI + PR C H + ++S + ++ Sbjct: 216 RGRLQSLISHVDPRTCFYHLKKLVVSGVITKQ 247 >SB_48583| Best HMM Match : HIM (HMM E-Value=7.3) Length = 79 Score = 26.2 bits (55), Expect = 9.8 Identities = 12/43 (27%), Positives = 22/43 (51%) Frame = +2 Query: 191 CWDPKDGELCLVRSKSGETLMEDRSDSDVQIDRRNWV*GRKTN 319 C +DG+ +V+ K G+ + +S + I R+ WV + N Sbjct: 28 CIKIRDGDKRIVKVKEGKFTVNGALNSQMLIVRKGWVISSRVN 70 >SB_44333| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 550 Score = 26.2 bits (55), Expect = 9.8 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +3 Query: 36 IFNIKLKGVTKVKANARRSFREDEIIELR 122 ++N+ + + K NA SF E+EI EL+ Sbjct: 311 VYNVLYYNIKEQKKNAAGSFTEEEIRELK 339 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,543,777 Number of Sequences: 59808 Number of extensions: 236354 Number of successful extensions: 507 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 471 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 507 length of database: 16,821,457 effective HSP length: 75 effective length of database: 12,335,857 effective search space used: 703143849 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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