Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0991
         (398 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   1e-05
SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   1e-04
SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.086
SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.11 
SB_36629| Best HMM Match : Fer2 (HMM E-Value=0.0041)                   30   0.60 
SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28)                  27   4.3  
SB_32283| Best HMM Match : Homeobox (HMM E-Value=4.5e-20)              27   7.4  
SB_49586| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_48583| Best HMM Match : HIM (HMM E-Value=7.3)                       26   9.8  
SB_44333| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 38

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 20/29 (68%), Positives = 21/29 (72%)
 Frame = -1

Query: 269 NRYGPPSGFPLTST*PGIVHHLSGPSICA 183
           NRY PP  FPL S   GIVHHLSGP+ CA
Sbjct: 1   NRYEPPPEFPLASPYSGIVHHLSGPNRCA 29


>SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = -3

Query: 270 ESLRSSIRVSPDFDLTRHSSPSFGSQHLCS 181
           ESLR+S RVS  F L RHSSPSFGSQ + S
Sbjct: 35  ESLRASTRVSSGFTLFRHSSPSFGSQQMRS 64


>SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 33.1 bits (72), Expect = 0.086
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = -1

Query: 269 NRYGPPSGFPLTST*PGIVHH 207
           NRY PP  FPL S   GIVHH
Sbjct: 1   NRYEPPPEFPLASPYSGIVHH 21


>SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = -2

Query: 319 ISLSPLYPVPTIDLHVR 269
           ISLSPLYP  TIDLHVR
Sbjct: 38  ISLSPLYPNLTIDLHVR 54


>SB_36629| Best HMM Match : Fer2 (HMM E-Value=0.0041)
          Length = 128

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
 Frame = +2

Query: 137 LPRRLVSNQ*MKARSEHKC----WDPKDGELCLVRSKSGETLMEDRSDSDVQID 286
           L RR VSN   + +++H+     +  +DG+   V++K G++L++   D+DV ++
Sbjct: 29  LARRYVSNGKEQTKAKHETVSITFVDRDGDRQTVKAKVGDSLLDVAKDNDVDLE 82


>SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28)
          Length = 307

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 215 VHHLSGPSICAQSAPSFTDWKRDASGVRKSR 123
           V  L+  S+C Q APSF + K+ AS VR ++
Sbjct: 183 VRKLAKISLCDQYAPSFKEKKKMASEVRVAK 213


>SB_32283| Best HMM Match : Homeobox (HMM E-Value=4.5e-20)
          Length = 398

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 291 RRSICTSESLRSSIRVSPDFDLTRHSSPSFGSQH--LCSERAF 169
           R S C+S   R S+  SPD   TR ++ SF ++H   C +R F
Sbjct: 220 RSSPCSSPGTRPSLCSSPD---TRTTTRSFFTEHQVACLQRVF 259


>SB_49586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 181 RARLHSLIGNETPRECENHERSSIISSSLNER 86
           R RL SLI +  PR C  H +  ++S  + ++
Sbjct: 216 RGRLQSLISHVDPRTCFYHLKKLVVSGVITKQ 247


>SB_48583| Best HMM Match : HIM (HMM E-Value=7.3)
          Length = 79

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 191 CWDPKDGELCLVRSKSGETLMEDRSDSDVQIDRRNWV*GRKTN 319
           C   +DG+  +V+ K G+  +    +S + I R+ WV   + N
Sbjct: 28  CIKIRDGDKRIVKVKEGKFTVNGALNSQMLIVRKGWVISSRVN 70


>SB_44333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 36  IFNIKLKGVTKVKANARRSFREDEIIELR 122
           ++N+    + + K NA  SF E+EI EL+
Sbjct: 311 VYNVLYYNIKEQKKNAAGSFTEEEIRELK 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,543,777
Number of Sequences: 59808
Number of extensions: 236354
Number of successful extensions: 507
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)