SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0991
         (398 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276485-1|CAB81951.1|  283|Homo sapiens integral membrane trans...    59   5e-09
BC030644-1|AAH30644.1|  641|Homo sapiens regulatory factor X, 4 ...    28   9.9  
BC028582-1|AAH28582.1|  641|Homo sapiens regulatory factor X, 4 ...    28   9.9  
AY102009-1|AAM52484.1|  735|Homo sapiens winged-helix transcript...    28   9.9  
AL833921-1|CAD38777.1|  480|Homo sapiens hypothetical protein pr...    28   9.9  
AK074913-1|BAC11288.1|  592|Homo sapiens protein ( Homo sapiens ...    28   9.9  
AF332192-1|AAK17191.1|  641|Homo sapiens transcription factor NY...    28   9.9  
AB195785-1|BAE48238.1|  370|Homo sapiens regulatory factor X4 is...    28   9.9  
AB195784-1|BAE48237.1|  390|Homo sapiens regulatory factor X4 is...    28   9.9  
AB095366-1|BAE48232.1|  735|Homo sapiens regulatory factor X4, i...    28   9.9  
AB095365-1|BAE48231.1|  744|Homo sapiens regulatory factor X4, i...    28   9.9  
AB044245-1|BAB59001.1|  563|Homo sapiens transcription factor RF...    28   9.9  

>AJ276485-1|CAB81951.1|  283|Homo sapiens integral membrane
           transporter protein protein.
          Length = 283

 Score = 59.3 bits (137), Expect = 5e-09
 Identities = 25/34 (73%), Positives = 29/34 (85%)
 Frame = +3

Query: 207 MVNYAWSGRSQGKP*WRTVAILTCKSIVGTGYRG 308
           MVNYAW+GRSQ K  WR+VA+LTCKS+V  GYRG
Sbjct: 1   MVNYAWAGRSQRKLWWRSVAVLTCKSVVRPGYRG 34


>BC030644-1|AAH30644.1|  641|Homo sapiens regulatory factor X, 4
           (influences HLA class II expression) protein.
          Length = 641

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 231 DLTRHSSPSFGSQHL 187
           D+T HS+PSFGS HL
Sbjct: 347 DMTLHSAPSFGSFHL 361


>BC028582-1|AAH28582.1|  641|Homo sapiens regulatory factor X, 4
           (influences HLA class II expression) protein.
          Length = 641

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 231 DLTRHSSPSFGSQHL 187
           D+T HS+PSFGS HL
Sbjct: 347 DMTLHSAPSFGSFHL 361


>AY102009-1|AAM52484.1|  735|Homo sapiens winged-helix transcription
           factor RFX4 variant 3 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 231 DLTRHSSPSFGSQHL 187
           D+T HS+PSFGS HL
Sbjct: 441 DMTLHSAPSFGSFHL 455


>AL833921-1|CAD38777.1|  480|Homo sapiens hypothetical protein
           protein.
          Length = 480

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 231 DLTRHSSPSFGSQHL 187
           D+T HS+PSFGS HL
Sbjct: 186 DMTLHSAPSFGSFHL 200


>AK074913-1|BAC11288.1|  592|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90432 fis, clone NT2RP3000677, weakly similar to
           DNA BINDING PROTEIN RFX2. ).
          Length = 592

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 231 DLTRHSSPSFGSQHL 187
           D+T HS+PSFGS HL
Sbjct: 298 DMTLHSAPSFGSFHL 312


>AF332192-1|AAK17191.1|  641|Homo sapiens transcription factor
           NYD-sp10 protein.
          Length = 641

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 231 DLTRHSSPSFGSQHL 187
           D+T HS+PSFGS HL
Sbjct: 347 DMTLHSAPSFGSFHL 361


>AB195785-1|BAE48238.1|  370|Homo sapiens regulatory factor X4
           isoform F protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 231 DLTRHSSPSFGSQHL 187
           D+T HS+PSFGS HL
Sbjct: 76  DMTLHSAPSFGSFHL 90


>AB195784-1|BAE48237.1|  390|Homo sapiens regulatory factor X4
           isoform E protein.
          Length = 390

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 231 DLTRHSSPSFGSQHL 187
           D+T HS+PSFGS HL
Sbjct: 96  DMTLHSAPSFGSFHL 110


>AB095366-1|BAE48232.1|  735|Homo sapiens regulatory factor X4,
           isoform d protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 231 DLTRHSSPSFGSQHL 187
           D+T HS+PSFGS HL
Sbjct: 441 DMTLHSAPSFGSFHL 455


>AB095365-1|BAE48231.1|  744|Homo sapiens regulatory factor X4,
           isoform c protein.
          Length = 744

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 231 DLTRHSSPSFGSQHL 187
           D+T HS+PSFGS HL
Sbjct: 450 DMTLHSAPSFGSFHL 464


>AB044245-1|BAB59001.1|  563|Homo sapiens transcription factor RFX4
           protein.
          Length = 563

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 231 DLTRHSSPSFGSQHL 187
           D+T HS+PSFGS HL
Sbjct: 450 DMTLHSAPSFGSFHL 464


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,813,304
Number of Sequences: 237096
Number of extensions: 1085173
Number of successful extensions: 5572
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5572
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -