Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0991
(398 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ276485-1|CAB81951.1| 283|Homo sapiens integral membrane trans... 59 5e-09
BC030644-1|AAH30644.1| 641|Homo sapiens regulatory factor X, 4 ... 28 9.9
BC028582-1|AAH28582.1| 641|Homo sapiens regulatory factor X, 4 ... 28 9.9
AY102009-1|AAM52484.1| 735|Homo sapiens winged-helix transcript... 28 9.9
AL833921-1|CAD38777.1| 480|Homo sapiens hypothetical protein pr... 28 9.9
AK074913-1|BAC11288.1| 592|Homo sapiens protein ( Homo sapiens ... 28 9.9
AF332192-1|AAK17191.1| 641|Homo sapiens transcription factor NY... 28 9.9
AB195785-1|BAE48238.1| 370|Homo sapiens regulatory factor X4 is... 28 9.9
AB195784-1|BAE48237.1| 390|Homo sapiens regulatory factor X4 is... 28 9.9
AB095366-1|BAE48232.1| 735|Homo sapiens regulatory factor X4, i... 28 9.9
AB095365-1|BAE48231.1| 744|Homo sapiens regulatory factor X4, i... 28 9.9
AB044245-1|BAB59001.1| 563|Homo sapiens transcription factor RF... 28 9.9
>AJ276485-1|CAB81951.1| 283|Homo sapiens integral membrane
transporter protein protein.
Length = 283
Score = 59.3 bits (137), Expect = 5e-09
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = +3
Query: 207 MVNYAWSGRSQGKP*WRTVAILTCKSIVGTGYRG 308
MVNYAW+GRSQ K WR+VA+LTCKS+V GYRG
Sbjct: 1 MVNYAWAGRSQRKLWWRSVAVLTCKSVVRPGYRG 34
>BC030644-1|AAH30644.1| 641|Homo sapiens regulatory factor X, 4
(influences HLA class II expression) protein.
Length = 641
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -3
Query: 231 DLTRHSSPSFGSQHL 187
D+T HS+PSFGS HL
Sbjct: 347 DMTLHSAPSFGSFHL 361
>BC028582-1|AAH28582.1| 641|Homo sapiens regulatory factor X, 4
(influences HLA class II expression) protein.
Length = 641
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -3
Query: 231 DLTRHSSPSFGSQHL 187
D+T HS+PSFGS HL
Sbjct: 347 DMTLHSAPSFGSFHL 361
>AY102009-1|AAM52484.1| 735|Homo sapiens winged-helix transcription
factor RFX4 variant 3 protein.
Length = 735
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -3
Query: 231 DLTRHSSPSFGSQHL 187
D+T HS+PSFGS HL
Sbjct: 441 DMTLHSAPSFGSFHL 455
>AL833921-1|CAD38777.1| 480|Homo sapiens hypothetical protein
protein.
Length = 480
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -3
Query: 231 DLTRHSSPSFGSQHL 187
D+T HS+PSFGS HL
Sbjct: 186 DMTLHSAPSFGSFHL 200
>AK074913-1|BAC11288.1| 592|Homo sapiens protein ( Homo sapiens
cDNA FLJ90432 fis, clone NT2RP3000677, weakly similar to
DNA BINDING PROTEIN RFX2. ).
Length = 592
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -3
Query: 231 DLTRHSSPSFGSQHL 187
D+T HS+PSFGS HL
Sbjct: 298 DMTLHSAPSFGSFHL 312
>AF332192-1|AAK17191.1| 641|Homo sapiens transcription factor
NYD-sp10 protein.
Length = 641
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -3
Query: 231 DLTRHSSPSFGSQHL 187
D+T HS+PSFGS HL
Sbjct: 347 DMTLHSAPSFGSFHL 361
>AB195785-1|BAE48238.1| 370|Homo sapiens regulatory factor X4
isoform F protein.
Length = 370
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -3
Query: 231 DLTRHSSPSFGSQHL 187
D+T HS+PSFGS HL
Sbjct: 76 DMTLHSAPSFGSFHL 90
>AB195784-1|BAE48237.1| 390|Homo sapiens regulatory factor X4
isoform E protein.
Length = 390
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -3
Query: 231 DLTRHSSPSFGSQHL 187
D+T HS+PSFGS HL
Sbjct: 96 DMTLHSAPSFGSFHL 110
>AB095366-1|BAE48232.1| 735|Homo sapiens regulatory factor X4,
isoform d protein.
Length = 735
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -3
Query: 231 DLTRHSSPSFGSQHL 187
D+T HS+PSFGS HL
Sbjct: 441 DMTLHSAPSFGSFHL 455
>AB095365-1|BAE48231.1| 744|Homo sapiens regulatory factor X4,
isoform c protein.
Length = 744
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -3
Query: 231 DLTRHSSPSFGSQHL 187
D+T HS+PSFGS HL
Sbjct: 450 DMTLHSAPSFGSFHL 464
>AB044245-1|BAB59001.1| 563|Homo sapiens transcription factor RFX4
protein.
Length = 563
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -3
Query: 231 DLTRHSSPSFGSQHL 187
D+T HS+PSFGS HL
Sbjct: 450 DMTLHSAPSFGSFHL 464
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,813,304
Number of Sequences: 237096
Number of extensions: 1085173
Number of successful extensions: 5572
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5572
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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