BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0991 (398 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AJ276485-1|CAB81951.1| 283|Homo sapiens integral membrane trans... 59 5e-09 BC030644-1|AAH30644.1| 641|Homo sapiens regulatory factor X, 4 ... 28 9.9 BC028582-1|AAH28582.1| 641|Homo sapiens regulatory factor X, 4 ... 28 9.9 AY102009-1|AAM52484.1| 735|Homo sapiens winged-helix transcript... 28 9.9 AL833921-1|CAD38777.1| 480|Homo sapiens hypothetical protein pr... 28 9.9 AK074913-1|BAC11288.1| 592|Homo sapiens protein ( Homo sapiens ... 28 9.9 AF332192-1|AAK17191.1| 641|Homo sapiens transcription factor NY... 28 9.9 AB195785-1|BAE48238.1| 370|Homo sapiens regulatory factor X4 is... 28 9.9 AB195784-1|BAE48237.1| 390|Homo sapiens regulatory factor X4 is... 28 9.9 AB095366-1|BAE48232.1| 735|Homo sapiens regulatory factor X4, i... 28 9.9 AB095365-1|BAE48231.1| 744|Homo sapiens regulatory factor X4, i... 28 9.9 AB044245-1|BAB59001.1| 563|Homo sapiens transcription factor RF... 28 9.9 >AJ276485-1|CAB81951.1| 283|Homo sapiens integral membrane transporter protein protein. Length = 283 Score = 59.3 bits (137), Expect = 5e-09 Identities = 25/34 (73%), Positives = 29/34 (85%) Frame = +3 Query: 207 MVNYAWSGRSQGKP*WRTVAILTCKSIVGTGYRG 308 MVNYAW+GRSQ K WR+VA+LTCKS+V GYRG Sbjct: 1 MVNYAWAGRSQRKLWWRSVAVLTCKSVVRPGYRG 34 >BC030644-1|AAH30644.1| 641|Homo sapiens regulatory factor X, 4 (influences HLA class II expression) protein. Length = 641 Score = 28.3 bits (60), Expect = 9.9 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 231 DLTRHSSPSFGSQHL 187 D+T HS+PSFGS HL Sbjct: 347 DMTLHSAPSFGSFHL 361 >BC028582-1|AAH28582.1| 641|Homo sapiens regulatory factor X, 4 (influences HLA class II expression) protein. Length = 641 Score = 28.3 bits (60), Expect = 9.9 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 231 DLTRHSSPSFGSQHL 187 D+T HS+PSFGS HL Sbjct: 347 DMTLHSAPSFGSFHL 361 >AY102009-1|AAM52484.1| 735|Homo sapiens winged-helix transcription factor RFX4 variant 3 protein. Length = 735 Score = 28.3 bits (60), Expect = 9.9 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 231 DLTRHSSPSFGSQHL 187 D+T HS+PSFGS HL Sbjct: 441 DMTLHSAPSFGSFHL 455 >AL833921-1|CAD38777.1| 480|Homo sapiens hypothetical protein protein. Length = 480 Score = 28.3 bits (60), Expect = 9.9 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 231 DLTRHSSPSFGSQHL 187 D+T HS+PSFGS HL Sbjct: 186 DMTLHSAPSFGSFHL 200 >AK074913-1|BAC11288.1| 592|Homo sapiens protein ( Homo sapiens cDNA FLJ90432 fis, clone NT2RP3000677, weakly similar to DNA BINDING PROTEIN RFX2. ). Length = 592 Score = 28.3 bits (60), Expect = 9.9 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 231 DLTRHSSPSFGSQHL 187 D+T HS+PSFGS HL Sbjct: 298 DMTLHSAPSFGSFHL 312 >AF332192-1|AAK17191.1| 641|Homo sapiens transcription factor NYD-sp10 protein. Length = 641 Score = 28.3 bits (60), Expect = 9.9 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 231 DLTRHSSPSFGSQHL 187 D+T HS+PSFGS HL Sbjct: 347 DMTLHSAPSFGSFHL 361 >AB195785-1|BAE48238.1| 370|Homo sapiens regulatory factor X4 isoform F protein. Length = 370 Score = 28.3 bits (60), Expect = 9.9 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 231 DLTRHSSPSFGSQHL 187 D+T HS+PSFGS HL Sbjct: 76 DMTLHSAPSFGSFHL 90 >AB195784-1|BAE48237.1| 390|Homo sapiens regulatory factor X4 isoform E protein. Length = 390 Score = 28.3 bits (60), Expect = 9.9 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 231 DLTRHSSPSFGSQHL 187 D+T HS+PSFGS HL Sbjct: 96 DMTLHSAPSFGSFHL 110 >AB095366-1|BAE48232.1| 735|Homo sapiens regulatory factor X4, isoform d protein. Length = 735 Score = 28.3 bits (60), Expect = 9.9 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 231 DLTRHSSPSFGSQHL 187 D+T HS+PSFGS HL Sbjct: 441 DMTLHSAPSFGSFHL 455 >AB095365-1|BAE48231.1| 744|Homo sapiens regulatory factor X4, isoform c protein. Length = 744 Score = 28.3 bits (60), Expect = 9.9 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 231 DLTRHSSPSFGSQHL 187 D+T HS+PSFGS HL Sbjct: 450 DMTLHSAPSFGSFHL 464 >AB044245-1|BAB59001.1| 563|Homo sapiens transcription factor RFX4 protein. Length = 563 Score = 28.3 bits (60), Expect = 9.9 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -3 Query: 231 DLTRHSSPSFGSQHL 187 D+T HS+PSFGS HL Sbjct: 450 DMTLHSAPSFGSFHL 464 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 52,813,304 Number of Sequences: 237096 Number of extensions: 1085173 Number of successful extensions: 5572 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 5518 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5572 length of database: 76,859,062 effective HSP length: 82 effective length of database: 57,417,190 effective search space used: 2870859500 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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