Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0991
         (398 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT012669-1|AAT08475.1|   46|Drosophila melanogaster LD48059p pro...    64   9e-11
L77907-1|AAC37264.1| 1883|Drosophila melanogaster chromodomain-h...    29   3.0  
BT011071-1|AAR82736.1| 1645|Drosophila melanogaster SD21488p pro...    29   3.0  
AY095050-1|AAM11378.1| 1101|Drosophila melanogaster LD39323p pro...    29   3.0  
AE014134-528|AAF51170.1| 1883|Drosophila melanogaster CG3733-PA ...    29   3.0  
AY094641-1|AAM10994.1|  605|Drosophila melanogaster AT09114p pro...    28   5.3  
AE014297-1049|AAF54458.1|  605|Drosophila melanogaster CG8526-PA...    28   5.3  
AE014296-3256|AAF49087.1|  720|Drosophila melanogaster CG17732-P...    27   9.2  

>BT012669-1|AAT08475.1|   46|Drosophila melanogaster LD48059p
           protein.
          Length = 46

 Score = 63.7 bits (148), Expect = 9e-11
 Identities = 29/38 (76%), Positives = 32/38 (84%)
 Frame = +2

Query: 182 EHKCWDPKDGELCLVRSKSGETLMEDRSDSDVQIDRRN 295
           EH C DPKDGEL L+R KSGETLMEDR+ SDVQID +N
Sbjct: 9   EHICCDPKDGELYLIRLKSGETLMEDRNSSDVQIDCQN 46


>L77907-1|AAC37264.1| 1883|Drosophila melanogaster
           chromodomain-helicase-DNA-bindingprotein protein.
          Length = 1883

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 215 VHHLSGPSICAQSAPSFTDWKRD 147
           +HHL GP +C     + T W+R+
Sbjct: 573 IHHLYGPFLCVVPLSTMTAWQRE 595


>BT011071-1|AAR82736.1| 1645|Drosophila melanogaster SD21488p
           protein.
          Length = 1645

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 215 VHHLSGPSICAQSAPSFTDWKRD 147
           +HHL GP +C     + T W+R+
Sbjct: 573 IHHLYGPFLCVVPLSTMTAWQRE 595


>AY095050-1|AAM11378.1| 1101|Drosophila melanogaster LD39323p
           protein.
          Length = 1101

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 215 VHHLSGPSICAQSAPSFTDWKRD 147
           +HHL GP +C     + T W+R+
Sbjct: 41  IHHLYGPFLCVVPLSTMTAWQRE 63


>AE014134-528|AAF51170.1| 1883|Drosophila melanogaster CG3733-PA
           protein.
          Length = 1883

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 215 VHHLSGPSICAQSAPSFTDWKRD 147
           +HHL GP +C     + T W+R+
Sbjct: 573 IHHLYGPFLCVVPLSTMTAWQRE 595


>AY094641-1|AAM10994.1|  605|Drosophila melanogaster AT09114p
           protein.
          Length = 605

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = -1

Query: 299 PSSDDR-FARQNRYGPPSGFPLTST*PGIVHH--LSGPSICAQSAPSFTDWKRDASGVRK 129
           PS  DR +  ++  GP    P  S  P  V +  +    +   S   F DWKR A+ V K
Sbjct: 49  PSCHDRNYTSKDNDGPMMVLPAVSGAPYRVLYDLIEFCPLMDSSCMGFCDWKRIANEVGK 108

Query: 128 SRT*LDNFILPERTSSV 78
           +    D F++   T ++
Sbjct: 109 TYKSYDGFVILHGTDTL 125


>AE014297-1049|AAF54458.1|  605|Drosophila melanogaster CG8526-PA
           protein.
          Length = 605

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = -1

Query: 299 PSSDDR-FARQNRYGPPSGFPLTST*PGIVHH--LSGPSICAQSAPSFTDWKRDASGVRK 129
           PS  DR +  ++  GP    P  S  P  V +  +    +   S   F DWKR A+ V K
Sbjct: 49  PSCHDRNYTSKDNDGPMMVLPAVSGAPYRVLYDLIEFCPLMDSSCMGFCDWKRIANEVGK 108

Query: 128 SRT*LDNFILPERTSSV 78
           +    D F++   T ++
Sbjct: 109 TYKSYDGFVILHGTDTL 125


>AE014296-3256|AAF49087.1|  720|Drosophila melanogaster CG17732-PA
           protein.
          Length = 720

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 266 RYGPPSGFPLTST*PGIVHHLSGPSICAQSA 174
           R G P  F  T+    ++HH+  P++C + A
Sbjct: 303 RSGSPEDFGQTALCQQLIHHIVQPNVCNEDA 333


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,636,228
Number of Sequences: 53049
Number of extensions: 338836
Number of successful extensions: 667
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1149697725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)