Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0991
         (398 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68117-1|CAA92181.2|  459|Caenorhabditis elegans Hypothetical pr...    28   2.1  
U21319-2|AAC46672.1|  150|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AF068716-7|AAC17746.1|  384|Caenorhabditis elegans Hypothetical ...    27   6.5  
AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched relat...    26   8.7  

>Z68117-1|CAA92181.2|  459|Caenorhabditis elegans Hypothetical
           protein F45E6.3 protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 54  KGVTKVKANARRSFREDEIIELRS*FSHSRGVSFPIS 164
           K ++++  + RR + E +  +L S F H  G+ +P+S
Sbjct: 116 KVLSQIDKDVRRLYPEIQFFQLLSRFPHQHGMKYPLS 152


>U21319-2|AAC46672.1|  150|Caenorhabditis elegans Hypothetical
           protein C30G12.3 protein.
          Length = 150

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 163 LIGNETPRECENHERSSIISSSLN 92
           LIG ETP   ++HE +S+  S LN
Sbjct: 45  LIGAETPPSSDHHEPNSVALSGLN 68


>AF068716-7|AAC17746.1|  384|Caenorhabditis elegans Hypothetical
           protein F26D11.2 protein.
          Length = 384

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 88  VRSGRMKLSSY-VRDFRTPEASRFQSVN 168
           ++S R++ + Y VR F  PE +RF S+N
Sbjct: 327 IKSFRVETADYTVRAFADPEKTRFSSIN 354


>AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched related
           family protein 11 protein.
          Length = 820

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = -2

Query: 193 AFVLRARL-HSLIGNETPRECEN---HERSSIISSSLNERRAFAFTFVTPFSLMLKIYKT 26
           AF+L  R  H +   +TPR  E        SI  +SL    AF   F+TP   M     T
Sbjct: 316 AFILLHRWKHHIAITDTPRRLEQVIVDVGPSITITSLTNIIAFGIGFLTPTPQMSLFCLT 375

Query: 25  Q*LAHMLD 2
             LA +LD
Sbjct: 376 ASLALLLD 383


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,501,676
Number of Sequences: 27780
Number of extensions: 172683
Number of successful extensions: 413
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)