Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0990
(513 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 148 6e-37
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 48 8e-07
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 38 9e-04
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.2
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 2.9
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 26 3.8
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 5.0
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc... 25 6.7
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 25 8.8
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 25 8.8
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p... 25 8.8
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 148 bits (358), Expect = 6e-37
Identities = 76/105 (72%), Positives = 86/105 (81%), Gaps = 3/105 (2%)
Frame = +1
Query: 205 DVQFED--NLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDS 375
D QFED +LP ILNALEV+ + RLVLEVAQH+GENTVRTIAMDGTEGLVRG V+D+
Sbjct: 66 DCQFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDT 125
Query: 376 GSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEF 510
GSPI IPVG TLGRI+NVIGEP+DERGPI K + IHA+AP F
Sbjct: 126 GSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSF 170
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 48.0 bits (109), Expect = 8e-07
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +1
Query: 286 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 462
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G PID +GP
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 463 IPTDKTAAIHAEAP 504
I T + + +AP
Sbjct: 149 IKTTERRRVQLKAP 162
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 37.9 bits (84), Expect = 9e-04
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 277 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 453
VLEVA H V +GT G+ VR + +G +RIPV + LGR+ N G PID
Sbjct: 63 VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPID- 117
Query: 454 RGP 462
+GP
Sbjct: 118 KGP 120
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 1.2
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 461 GPRSSIGSPITLMMRPRVSA-PTGIRIGEPESSTGCPRTKPSVPSM 327
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 2.9
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 86 NPFQNVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSV 196
NPF N ++S+++MP L+NLQE + + P S+
Sbjct: 115 NPFPNGKQSIKAMP-----SLVNLQEDSVISKFPNSL 146
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 337 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 453
T GL G PV +G P+ + +G I + I P+ +
Sbjct: 77 TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 401 PTGIRIGEPESSTGCPRTKPSVPSMAMV 318
P G +G PES+ KPS PS + +
Sbjct: 795 PLGHALGNPESNNSSNSFKPSHPSQSFL 822
>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 262 RSPRLVLEVAQHLGENTVRTIAMD 333
R+P LVL+ A LGEN + D
Sbjct: 362 RNPSLVLDSANQLGENVAWPVQYD 385
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 24.6 bits (51), Expect = 8.8
Identities = 22/78 (28%), Positives = 33/78 (42%)
Frame = +1
Query: 268 PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPI 447
P + E +H G N+ EG+V+ L++ P+ IPV + N IGE
Sbjct: 10 PAIKNEPPKHYGPNSA------DREGIVKAYKELEAELPVTIPVIIDGKEVETNTIGE-- 61
Query: 448 DERGPIPTDKTAAIHAEA 501
+R P K A + A
Sbjct: 62 -QRCPFEHKKVVARYHRA 78
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 24.6 bits (51), Expect = 8.8
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 16 FLKMLGAISRVGSGILAVKSVAEKSLSECGKIVAVNAVNKRDY 144
F+K++ ++ G+G+LA+ VA+ ++ N + KRDY
Sbjct: 11 FIKLVSSLQYTGNGVLALDFVAKTFPNQ------ENQLEKRDY 47
>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 8.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 313 VRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPID 450
++ + DG G+ + + D+ P P E LGR+I V PID
Sbjct: 1 MKAVIADGQNGV---EVISDAPKPT--PEKGEFLGRVIRVAFNPID 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,103
Number of Sequences: 5004
Number of extensions: 43481
Number of successful extensions: 135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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