Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0990
(513 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 186 7e-48
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 7e-05
SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79) 30 1.3
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19) 27 6.9
SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21) 27 9.1
SB_23856| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_16998| Best HMM Match : Filamin (HMM E-Value=0.0037) 27 9.1
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 186 bits (454), Expect = 7e-48
Identities = 86/103 (83%), Positives = 96/103 (93%)
Frame = +1
Query: 205 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSP 384
DVQF+++LPPILNALEV+NR+PRL+LEVAQHLGENTVRTIAMDGTEGL+RGQ +D+G P
Sbjct: 85 DVQFDEDLPPILNALEVENRTPRLILEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGGP 144
Query: 385 IRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFV 513
I IPVG ETLGRIINVIGEPIDERGP+ TDK AAIHAEAPEFV
Sbjct: 145 ITIPVGPETLGRIINVIGEPIDERGPVETDKRAAIHAEAPEFV 187
>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 44.0 bits (99), Expect = 7e-05
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +1
Query: 322 IAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAE 498
+ + G + L++ G V +G+ + +PVG E LGR+++ +G PID +GP + A + +
Sbjct: 12 VVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPTGGTR-ARVGVK 70
Query: 499 APEFV 513
AP +
Sbjct: 71 APGII 75
>SB_40036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 31.9 bits (69), Expect = 0.32
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -1
Query: 315 NCVLTQMLGYLKYEAGRSILHLKGI*NRRQVIFEL-HIYHSTDNGNNLTLAFSCRFSS 145
NC+L + GYLK ++ I++ G QV++ L +Y S + GNNL F +S
Sbjct: 48 NCLLWTIYGYLKDDSTIIIVNFVGA--LLQVVYILCFLYFSRERGNNLAFLFYSAIAS 103
>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
Length = 308
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 440 SPITLMMRPRV-SAPTGIRIGEPESSTG 360
S +T +P SAPTGI G+P SSTG
Sbjct: 112 STLTAFGQPSTTSAPTGISFGQPTSSTG 139
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 28.7 bits (61), Expect = 3.0
Identities = 23/69 (33%), Positives = 29/69 (42%)
Frame = -2
Query: 506 SGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPSVPSM 327
SG+S+ A +L GP SS+ P T P PTG+ + P S P P P M
Sbjct: 671 SGSSS--AQMLPPMPGPPSSMSGPTTSRHGP---PPTGLTMNPPTSMGMAPMMPPPGPGM 725
Query: 326 AMVRTVFSP 300
SP
Sbjct: 726 GTHPQQVSP 734
>SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 363
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +1
Query: 376 GSPIRIPVGAETLGRIINVIGEPIDERGPIPT 471
G PI P+G +GR I IG PI GPI T
Sbjct: 283 GRPIGRPIGL--IGRPIGPIGRPIGPIGPIGT 312
>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 355 GQPVLDSGSPIRIPVGAETL--GRIINVIGEPIDERGP 462
GQP D+G P G + G+++N GEP++ GP
Sbjct: 94 GQPANDTGQPSS-NAGQPLINTGQLVNNTGEPVNNTGP 130
>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
Length = 1341
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 231 RQVIFELHIYHSTDNGNNLTLAF 163
RQ H +HS D+ NNLT AF
Sbjct: 518 RQPYVTTHNHHSHDHNNNLTTAF 540
>SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)
Length = 636
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 214 FEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGT 339
F++++ P+LN L + +S L L ++ G N V +GT
Sbjct: 174 FQESVCPVLNTLTLHIKSSELDLNRPRNRGSNKVENGKNEGT 215
>SB_23856| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 274 GGEIDFAPQGHLESEAGYLRIAHL 203
G ID +P G +E E +LRI H+
Sbjct: 54 GYVIDVSPDGRVEMEKDHLRITHM 77
>SB_16998| Best HMM Match : Filamin (HMM E-Value=0.0037)
Length = 284
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 317 GPLPWTVLKA*SVGNPY*TLAHQ-FVSRWELKPS 415
G + W + A V +P T AH+ FVS+WEL+P+
Sbjct: 75 GSMRWDMRAA--VRSPARTNAHKSFVSKWELQPA 106
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,299,152
Number of Sequences: 59808
Number of extensions: 343426
Number of successful extensions: 854
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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