BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0990 (513 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 175 1e-44 AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 48 3e-06 AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 48 3e-06 U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 37 0.010 AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 32 0.21 AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 32 0.28 U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam ... 29 2.6 AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 28 3.4 Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 27 6.0 AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 27 6.0 AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 27 6.0 AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical ... 27 7.9 >U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase subunit protein 2 protein. Length = 538 Score = 175 bits (427), Expect = 1e-44 Identities = 82/103 (79%), Positives = 91/103 (88%) Frame = +1 Query: 205 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSP 384 DVQF++NLPPILN LEV RSPRL+LEV+QHLG+N VR IAMDGTEGLVRGQPV D+G P Sbjct: 81 DVQFDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDP 140 Query: 385 IRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFV 513 I+IPVG ETLGRI+NVIGEPIDERGPI + AAIHAEAPEFV Sbjct: 141 IKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFV 183 >AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical protein H28O16.1d protein. Length = 511 Score = 48.4 bits (110), Expect = 3e-06 Identities = 21/76 (27%), Positives = 41/76 (53%) Frame = +1 Query: 286 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 465 +A +L + V + + + G V +G+ + +PVG LGR+++ +G PID +GPI Sbjct: 63 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 122 Query: 466 PTDKTAAIHAEAPEFV 513 + + + +AP + Sbjct: 123 ANARRSRVEVKAPGII 138 >AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical protein H28O16.1a protein. Length = 538 Score = 48.4 bits (110), Expect = 3e-06 Identities = 21/76 (27%), Positives = 41/76 (53%) Frame = +1 Query: 286 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 465 +A +L + V + + + G V +G+ + +PVG LGR+++ +G PID +GPI Sbjct: 90 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 149 Query: 466 PTDKTAAIHAEAPEFV 513 + + + +AP + Sbjct: 150 ANARRSRVEVKAPGII 165 >U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase protein 12 protein. Length = 491 Score = 36.7 bits (81), Expect = 0.010 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = +1 Query: 298 LGENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPI 465 + +N +GT G+ + + +G +R PV + LGRI N G+PID+ P+ Sbjct: 71 ISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPV 127 >AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily assigned gene nameprotein 300 protein. Length = 501 Score = 32.3 bits (70), Expect = 0.21 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = +1 Query: 373 SGSPIRIPVGAETLGRIINVIGEPIDERGPI-PTD 474 +G R PV + LGRI N G+PID+ P+ P D Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPED 143 >AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical protein Y49A3A.2 protein. Length = 606 Score = 31.9 bits (69), Expect = 0.28 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = +1 Query: 337 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 453 T G+ G PVL +G P+ + +G +G I + I P+ + Sbjct: 59 TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKD 97 >U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam protein 3 protein. Length = 487 Score = 28.7 bits (61), Expect = 2.6 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Frame = +1 Query: 331 DGTEGLVRGQPV-LDSGSPIRIPVGAETLGRIINVIGEPIDE 453 D +G + G+P+ +D G ++ P G E + ++ N GEP+DE Sbjct: 152 DTVKGALLGEPITIDCG--VKGPSGKEPMIQMTNGNGEPLDE 191 >AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical protein H28O16.1c protein. Length = 503 Score = 28.3 bits (60), Expect = 3.4 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +1 Query: 430 VIGEPIDERGPIPTDKTAAIHAEAPEFV 513 V+G PID +GPI + + + +AP + Sbjct: 103 VLGNPIDGKGPIANARRSRVEVKAPGII 130 >Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical protein F25D7.4 protein. Length = 932 Score = 27.5 bits (58), Expect = 6.0 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = -2 Query: 446 IGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPSVPSMAMVRTVFS 303 +G P + RP P+ S+TG RT+P+VP+++ R + S Sbjct: 284 LGIPAPAVPRPVAGKPST----RSASTTGAARTRPAVPAVSAPRALTS 327 >AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical protein Y59A8B.9 protein. Length = 187 Score = 27.5 bits (58), Expect = 6.0 Identities = 19/71 (26%), Positives = 26/71 (36%) Frame = -2 Query: 512 TNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPSVP 333 T G +A +A M RS P+T M P + P S+ PR P Sbjct: 11 TEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAPTP 70 Query: 332 SMAMVRTVFSP 300 + A +T P Sbjct: 71 TAAPPKTCAPP 81 >AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical protein Y59A8B.7 protein. Length = 316 Score = 27.5 bits (58), Expect = 6.0 Identities = 19/71 (26%), Positives = 26/71 (36%) Frame = -2 Query: 512 TNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPSVP 333 T G +A +A M RS P+T M P + P S+ PR P Sbjct: 140 TEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAPTP 199 Query: 332 SMAMVRTVFSP 300 + A +T P Sbjct: 200 TAAPPKTCAPP 210 >AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical protein ZC581.9 protein. Length = 827 Score = 27.1 bits (57), Expect = 7.9 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = -1 Query: 138 PLVNGIDCNDFSTF 97 PLVNG+ C D STF Sbjct: 594 PLVNGLACKDLSTF 607 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,021,612 Number of Sequences: 27780 Number of extensions: 255176 Number of successful extensions: 637 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 587 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 637 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 985905834 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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