Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0990
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   175   1e-44
AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...    48   3e-06
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...    48   3e-06
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    37   0.010
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    32   0.21 
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    32   0.28 
U42830-4|AAC48277.1|  487|Caenorhabditis elegans Neuronal igcam ...    29   2.6  
AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical ...    28   3.4  
Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    27   6.0  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    27   6.0  
AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical ...    27   7.9  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  175 bits (427), Expect = 1e-44
 Identities = 82/103 (79%), Positives = 91/103 (88%)
 Frame = +1

Query: 205 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSP 384
           DVQF++NLPPILN LEV  RSPRL+LEV+QHLG+N VR IAMDGTEGLVRGQPV D+G P
Sbjct: 81  DVQFDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDP 140

Query: 385 IRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFV 513
           I+IPVG ETLGRI+NVIGEPIDERGPI +   AAIHAEAPEFV
Sbjct: 141 IKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFV 183


>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 21/76 (27%), Positives = 41/76 (53%)
 Frame = +1

Query: 286 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 465
           +A +L  + V  +     + +  G  V  +G+ + +PVG   LGR+++ +G PID +GPI
Sbjct: 63  MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 122

Query: 466 PTDKTAAIHAEAPEFV 513
              + + +  +AP  +
Sbjct: 123 ANARRSRVEVKAPGII 138


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 21/76 (27%), Positives = 41/76 (53%)
 Frame = +1

Query: 286 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 465
           +A +L  + V  +     + +  G  V  +G+ + +PVG   LGR+++ +G PID +GPI
Sbjct: 90  MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 149

Query: 466 PTDKTAAIHAEAPEFV 513
              + + +  +AP  +
Sbjct: 150 ANARRSRVEVKAPGII 165


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 298 LGENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPI 465
           + +N       +GT G+     + + +G  +R PV  + LGRI N  G+PID+  P+
Sbjct: 71  ISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPV 127


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 373 SGSPIRIPVGAETLGRIINVIGEPIDERGPI-PTD 474
           +G   R PV  + LGRI N  G+PID+  P+ P D
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPED 143


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 337 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 453
           T G+  G PVL +G P+ + +G   +G I + I  P+ +
Sbjct: 59  TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKD 97


>U42830-4|AAC48277.1|  487|Caenorhabditis elegans Neuronal igcam
           protein 3 protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 331 DGTEGLVRGQPV-LDSGSPIRIPVGAETLGRIINVIGEPIDE 453
           D  +G + G+P+ +D G  ++ P G E + ++ N  GEP+DE
Sbjct: 152 DTVKGALLGEPITIDCG--VKGPSGKEPMIQMTNGNGEPLDE 191


>AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical
           protein H28O16.1c protein.
          Length = 503

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 430 VIGEPIDERGPIPTDKTAAIHAEAPEFV 513
           V+G PID +GPI   + + +  +AP  +
Sbjct: 103 VLGNPIDGKGPIANARRSRVEVKAPGII 130


>Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical
           protein F25D7.4 protein.
          Length = 932

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 446 IGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPSVPSMAMVRTVFS 303
           +G P   + RP    P+        S+TG  RT+P+VP+++  R + S
Sbjct: 284 LGIPAPAVPRPVAGKPST----RSASTTGAARTRPAVPAVSAPRALTS 327


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/71 (26%), Positives = 26/71 (36%)
 Frame = -2

Query: 512 TNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPSVP 333
           T  G +A  +A     M  RS    P+T M  P  +         P  S+  PR     P
Sbjct: 11  TEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAPTP 70

Query: 332 SMAMVRTVFSP 300
           + A  +T   P
Sbjct: 71  TAAPPKTCAPP 81


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/71 (26%), Positives = 26/71 (36%)
 Frame = -2

Query: 512 TNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPSVP 333
           T  G +A  +A     M  RS    P+T M  P  +         P  S+  PR     P
Sbjct: 140 TEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAPTP 199

Query: 332 SMAMVRTVFSP 300
           + A  +T   P
Sbjct: 200 TAAPPKTCAPP 210


>AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical
           protein ZC581.9 protein.
          Length = 827

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 138 PLVNGIDCNDFSTF 97
           PLVNG+ C D STF
Sbjct: 594 PLVNGLACKDLSTF 607


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,021,612
Number of Sequences: 27780
Number of extensions: 255176
Number of successful extensions: 637
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)