Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0990
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   1.9  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   1.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   5.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.5  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   9.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 1   GLSS*FLKMLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 123
           G+    + MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 53  GILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVIN 93


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +1

Query: 16  FLKMLGAISRVGSGILAVKSVAEKSLSEC 102
           FLK LGA+   GSG  AV  V   S   C
Sbjct: 172 FLKKLGAVDIAGSG--AVHLVGGSSALAC 198


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 1   GLSS*FLKMLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 123
           G+    + MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 19  GILGFVIGMLGFVSVMGNGMVVYIFLSTKSLRTPSNLFVIN 59


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 262 RSPRLVLEVAQHLGENTVRTIAMDGTE 342
           RSP  + ++AQ+ G N +   A+D T+
Sbjct: 897 RSPDTLRKIAQNRGTNPLAPDAVDLTQ 923


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 331 DGTEGLVRGQPVLDSGSPI 387
           DGTEG+ +   VL    PI
Sbjct: 193 DGTEGIAKSGDVLVETEPI 211


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 366 YGLPTD*AFSTVHGNGPNCVLTQMLGYLKYEAGRSILH 253
           +G P D      +  GPN +   +L Y K E   +I +
Sbjct: 647 FGFPLDKPLYDFNYEGPNMLFKDILIYHKDEFDMNITY 684


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 366 YGLPTD*AFSTVHGNGPNCVLTQMLGYLKYEAGRSILH 253
           +G P D      +  GPN +   +L Y K E   +I +
Sbjct: 647 FGFPLDKPLYDFNYEGPNMLFKDILIYHKDEFDMNITY 684


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 285 LKYEAGRSILHLKGI*NRRQVIFELHIYH 199
           L+    + ++HLK I +   ++   +IYH
Sbjct: 100 LRDSVTKYLIHLKEIEDTEPILLIAYIYH 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,172
Number of Sequences: 438
Number of extensions: 2959
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)