Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0989
(462 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 290 3e-79
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 286 7e-78
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 286 7e-78
SB_56| Best HMM Match : Actin (HMM E-Value=0) 284 2e-77
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 283 5e-77
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 183 7e-47
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 1e-29
SB_54| Best HMM Match : Actin (HMM E-Value=0) 76 2e-14
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 61 5e-10
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 1e-09
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 59 2e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 57 8e-09
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 1e-08
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 49 2e-06
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.038
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.35
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.35
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.35
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.81
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_25841| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_24944| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012) 27 5.7
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 7.6
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_35006| Best HMM Match : PT (HMM E-Value=3.4) 27 10.0
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 10.0
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06) 27 10.0
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 290 bits (712), Expect = 3e-79
Identities = 131/134 (97%), Positives = 134/134 (100%)
Frame = +2
Query: 59 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 238
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 239 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 418
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 419 TQIMFETFNTPAMY 460
TQIMFETFN+PAMY
Sbjct: 121 TQIMFETFNSPAMY 134
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 286 bits (701), Expect = 7e-78
Identities = 130/134 (97%), Positives = 133/134 (99%)
Frame = +2
Query: 59 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 238
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 239 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 418
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 419 TQIMFETFNTPAMY 460
TQIMFETFN+PAMY
Sbjct: 121 TQIMFETFNSPAMY 134
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 286 bits (701), Expect = 7e-78
Identities = 128/134 (95%), Positives = 133/134 (99%)
Frame = +2
Query: 59 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 238
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 239 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 418
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 419 TQIMFETFNTPAMY 460
TQIMFETFN+PAMY
Sbjct: 121 TQIMFETFNSPAMY 134
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 284 bits (697), Expect = 2e-77
Identities = 129/132 (97%), Positives = 132/132 (100%)
Frame = +2
Query: 65 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 244
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 245 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 424
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 425 IMFETFNTPAMY 460
IMFETFN+PAMY
Sbjct: 122 IMFETFNSPAMY 133
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 283 bits (694), Expect = 5e-77
Identities = 128/132 (96%), Positives = 132/132 (100%)
Frame = +2
Query: 65 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 244
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 245 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 424
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 425 IMFETFNTPAMY 460
IMFETFN+PAMY
Sbjct: 122 IMFETFNSPAMY 133
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 183 bits (445), Expect = 7e-47
Identities = 83/89 (93%), Positives = 86/89 (96%)
Frame = +2
Query: 65 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 244
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 245 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 331
RGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 32.3 bits (70), Expect = 0.20
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 404 NREKMTQIMFETFNTPAMY 460
N + M +IMFETFN+PAMY
Sbjct: 78 NWDDMEKIMFETFNSPAMY 96
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 126 bits (303), Expect = 1e-29
Identities = 59/131 (45%), Positives = 84/131 (64%), Gaps = 3/131 (2%)
Frame = +2
Query: 77 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 250
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 251 ILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQI 427
+L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 428 MFETFNTPAMY 460
MFE + +Y
Sbjct: 127 MFENYQFEGVY 137
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 75.8 bits (178), Expect = 2e-14
Identities = 33/50 (66%), Positives = 40/50 (80%)
Frame = +2
Query: 311 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMY 460
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMY 2178
Score = 59.7 bits (138), Expect = 1e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +2
Query: 83 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 184
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 60.9 bits (141), Expect = 5e-10
Identities = 24/64 (37%), Positives = 41/64 (64%)
Frame = +2
Query: 269 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 448
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 449 PAMY 460
PA +
Sbjct: 63 PAFF 66
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +2
Query: 68 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 184
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 59.3 bits (137), Expect = 2e-09
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +2
Query: 359 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMY 460
+HPVLLTEAPLNP+ NREK ++ FETFN PA++
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALF 159
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 56.8 bits (131), Expect = 8e-09
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Frame = +2
Query: 53 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 223
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 224 GDEAQSKRGILTL 262
GD A +K G++ L
Sbjct: 753 GDAAVAKSGVMHL 765
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/60 (43%), Positives = 34/60 (56%)
Frame = +2
Query: 197 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 376
G+ D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 48.8 bits (111), Expect = 2e-06
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Frame = +2
Query: 71 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 250
++A LV+D G+ K GFA + APR++ P+ + + + + ++ ++GD+ + +
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKD 283
Query: 251 ILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 340
L Y P + G + NWD ++IW +TF E
Sbjct: 284 YSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 34.7 bits (76), Expect = 0.038
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -3
Query: 181 MAGPSHDRGKHCARSIISCEAGLAHTGAIVYYQRGNFFV 65
MA + D G++ + SI+S E GLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.35
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 260 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANRE 412
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.35
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 156 GNTARGASSPAKPALHIPEPLSTT 85
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.35
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 156 GNTARGASSPAKPALHIPEPLSTT 85
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 0.81
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 156 GNTARGASSPAKPALHIPEPLSTT 85
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/45 (28%), Positives = 16/45 (35%)
Frame = -3
Query: 157 GKHCARSIISCEAGLAHTGAIVYYQRGNFFVAHLELVKLVRCRCD 23
G+HC + I C G GA GN+ E C D
Sbjct: 724 GRHCEKDIDECSLGYCKNGATCTNTPGNYSCQCTEFTNGTNCELD 768
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 156 GNTARGASSPAKPALHIPEPLSTT 85
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 156 GNTARGASSPAKPALHIPEPLSTT 85
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_25841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = -2
Query: 248 LFCSVPHLLHKSPSVPYR---PSRPDGGAFPRSRETLREEHHLLRSRPCTYRS 99
LF + P L SVP P+R + G P S LR + LLR + TY +
Sbjct: 213 LFSAQPESLGPVVSVPEANAVPARVETGGTPASSPNLRVDQILLRLKMLTYNT 265
>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 233 PHLLHKSPSVPYRPSRPDGGAFPRSRETLREEHHLLRSRPCTYRSHCLLPTRQLLRR 63
P L +P + RPS + S + LL RP TYR+ LP+ LL +
Sbjct: 131 PLYLPSAPLLTERPSTYRAPLYLPSAPSTYRAPLLLTERPSTYRAPLYLPSTPLLTK 187
>SB_24944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 217 RVLLSHTDHHALMAGPSHDRGKHCARSIISCEAGLAHTGAIVYY 86
R++ S T H + G H G H ++ EAGL I+ +
Sbjct: 37 RLVFSATIEHEYLGGRYHSIGAHISQETSRHEAGLTQISRIIRF 80
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 171 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 61
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
Length = 1225
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 176 GAFPRSRETLREEHHLLRSRPCTYRS 99
G +P S++T R E + +RPCT S
Sbjct: 832 GCYPWSKQTFRHEGPPISARPCTAMS 857
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 77 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 181
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 27.1 bits (57), Expect = 7.6
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = -1
Query: 249 PLLLCASSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAKP 118
P C S P F +P P W LP+ E N G SS A P
Sbjct: 2225 PRAECESDPVDSLFSEVP---PEWSTLPSPEQNAFGGDSSWASP 2265
>SB_35006| Best HMM Match : PT (HMM E-Value=3.4)
Length = 325
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -1
Query: 270 GYLRVRIPLLLCASSPT*ESFCPIPTITP*WRGLPT 163
G + +++ LLL +SSP S PI TP +GL T
Sbjct: 275 GVIDIKLNLLLLSSSPMFLSAVPIAPHTPTLQGLHT 310
>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1077
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 56 KMCDEEVAALVVDNG-SGMCKAGFAGD 133
++CD++ + +N MCKAG+ GD
Sbjct: 487 RLCDKDAVCRLENNAIKCMCKAGYTGD 513
>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
Length = 425
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 121 AGLAHTGAIVYYQRGNFFVAHLELVKLVRC 32
+G +T A VY+QRGN + H + V + C
Sbjct: 358 SGRGNTWA-VYFQRGNTWTVHFQRVNTMGC 386
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,516,449
Number of Sequences: 59808
Number of extensions: 401007
Number of successful extensions: 1196
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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