Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0988
         (428 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7NLB7 Cluster: Glr1209 protein; n=2; Bacteria|Rep: Glr...    33   2.5  
UniRef50_A3ZMR3 Cluster: Putative uncharacterized protein; n=1; ...    32   5.8  
UniRef50_A1BE65 Cluster: Putative uncharacterized protein; n=2; ...    31   7.7  

>UniRef50_Q7NLB7 Cluster: Glr1209 protein; n=2; Bacteria|Rep:
           Glr1209 protein - Gloeobacter violaceus
          Length = 579

 Score = 33.1 bits (72), Expect = 2.5
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 285 IINLISSYHVWAVHGTQLLETWSGPRCSIVEDIWMLCTVG*GWQHWLRMLAMEE 124
           ++N +S + VW  H TQ L   + P  S V  +    +   GW H+   + ++E
Sbjct: 401 LLNTVSVHEVWPGHYTQFLWVKNNPDLSKVRKLITANSNAEGWAHYTEQMMLDE 454


>UniRef50_A3ZMR3 Cluster: Putative uncharacterized protein; n=1;
           Blastopirellula marina DSM 3645|Rep: Putative
           uncharacterized protein - Blastopirellula marina DSM
           3645
          Length = 370

 Score = 31.9 bits (69), Expect = 5.8
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 147 LRMLAMEEVACAIWNLVVDPETGTLYRTPFVFLI 46
           +R++ ++EVAC +W L +     T+ + PF FLI
Sbjct: 209 MRIIRIQEVACFLWCLAIAISVCTVGKYPFPFLI 242


>UniRef50_A1BE65 Cluster: Putative uncharacterized protein; n=2;
            Bacteria|Rep: Putative uncharacterized protein -
            Chlorobium phaeobacteroides (strain DSM 266)
          Length = 1448

 Score = 31.5 bits (68), Expect = 7.7
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = -3

Query: 234  LLETWSGPRCSIVEDIWMLCTVG*GWQHWLRMLAMEEVACAIWNLVVDPETGTLYRTPFV 55
            L+E  S  +C+I+ED++ L      W      +A+E +   I   +VDP+  TL+   FV
Sbjct: 1076 LIEELSSRKCTILEDLYHLARWFALWTSVAPKVAIESLKARI-EEIVDPKEQTLFTMTFV 1134


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 442,280,381
Number of Sequences: 1657284
Number of extensions: 8674977
Number of successful extensions: 21340
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21336
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20653970351
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)