Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0988
         (428 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   1.2  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   3.8  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   6.6  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    20   8.7  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    20   8.7  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 318 TIFICNFRSQQIINLISSYH 259
           T+F C F   ++I +IS  H
Sbjct: 93  TVFFCLFYQNKLIEVISKLH 112


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 88  RDRHSVPHAICISNLN 41
           R R  + HA+C++N N
Sbjct: 248 RRRIEIAHALCLTNKN 263


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +2

Query: 332 QSSNFSSHNKP 364
           Q+SN+SS++KP
Sbjct: 85  QNSNYSSNSKP 95


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 265 LPCLGSSWYSTPGNME 218
           + C+G SW ++P   E
Sbjct: 98  IACIGFSWIASPACTE 113


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = -1

Query: 122 WHVQYGIWWW 93
           W V  G+W W
Sbjct: 403 WSVNAGMWMW 412


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,158
Number of Sequences: 336
Number of extensions: 2304
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)