Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0988
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   1.6  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    26   2.2  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    26   2.2  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    26   2.9  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    26   2.9  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   3.8  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    25   5.0  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    25   5.0  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   6.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   6.6  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 148 PVLPTLPHRAEHPNVLHNRTTRTTPC 225
           P L  LP    HP V HN    + PC
Sbjct: 643 PYLCVLPKSCHHPQVKHNCHPTSEPC 668


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 324 PLTIFICNFRSQQIINLISSYHVWAVHGTQLLETW 220
           P TI   +F    +  L+SS  + +V+G ++  +W
Sbjct: 58  PWTIITTSFVDANVFTLLSSILILSVYGVEIERSW 92


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 282 INLISSYHVWAVHGTQLLETWSGPRCSIV 196
           + L   YHV+ V  +    TWS PR ++V
Sbjct: 250 MRLSEDYHVYFVDHSTKTTTWSDPRDNVV 278


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = +3

Query: 165 TPPC-RASKCPPQSNNEDHSMFPGVEYHELP 254
           TP C  AS  P   N  DH  F G EY   P
Sbjct: 305 TPSCPNASISPKTPNTGDHYGFDGAEYLGTP 335


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 61  WRAVQSACLWVHHQIPYC 114
           W+   S CLW H  IP C
Sbjct: 171 WKDKVSFCLWSHRFIPAC 188


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 104 FHIAHATSSIASILSQCCQPYPTVQSIQMSSTIEQRGP 217
           FH   ++S +  +   C  PYP +     SS++E + P
Sbjct: 31  FHEFSSSSFMDPVSLFCSSPYPNLPPHSRSSSLESKKP 68


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +2

Query: 302 LQINIVRGFDQ---SSNFSSHNKPLVXKNY 382
           L + + RG DQ   SS F + N P V +NY
Sbjct: 490 LPMVVTRGSDQVAISSKFEARNDPSVVRNY 519


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 65  VRYRVPVSGSTTRFHIAHATSSIASILSQCCQPYPTV 175
           ++++  +SGS   ++ A  T SI  + +    PYP +
Sbjct: 421 LQFKYQLSGSLEPYYAAQGTDSILGMTTMPPTPYPAL 457


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 271 FVLPCLGSSWYSTPGNMEWSSLFD 200
           ++  CLGS   + PG ME+  ++D
Sbjct: 96  YIALCLGSHAATIPGCMEYKMIYD 119


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 116  VQYGIWWWTQRQALCTARHLY 54
            V + I+WW    ALC A  L+
Sbjct: 1531 VAHLIYWWVSIMALCVAPFLF 1551


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,847,931
Number of Sequences: 5004
Number of extensions: 36800
Number of successful extensions: 117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)